Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 0.0e+00 1492.6 779 100.0
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.5e-160 570.9 321 91.3
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 1.7e-13 82.4 63 55.6
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 1.7e-13 82.4 76 50.0
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 4.9e-13 80.9 67 55.2
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 6.3e-13 80.5 94 43.6
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 8.3e-13 80.1 73 49.3
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.8e-12 79.0 75 52.0
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 1.8e-12 79.0 86 46.5
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.8e-12 79.0 122 38.5
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 2.4e-12 78.6 76 48.7
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 2.4e-12 78.6 71 49.3
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 3.1e-12 78.2 73 52.1
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.1e-12 78.2 92 45.7
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 5.4e-12 77.4 82 47.6
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 7.0e-12 77.0 84 46.4
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 7.0e-12 77.0 82 50.0
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 9.2e-12 76.6 78 47.4
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 9.2e-12 76.6 91 41.8
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 9.2e-12 76.6 75 53.3
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 9.2e-12 76.6 81 46.9
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 1.2e-11 76.3 62 51.6
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.2e-11 76.3 64 53.1
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 1.6e-11 75.9 88 45.5
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.6e-11 75.9 107 42.1
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 1.6e-11 75.9 75 46.7
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.0e-11 75.5 93 45.2
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 2.0e-11 75.5 179 30.7
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.7e-11 75.1 94 46.8
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 3.5e-11 74.7 90 46.7
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 3.5e-11 74.7 90 42.2
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 4.5e-11 74.3 84 44.0
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 4.5e-11 74.3 91 44.0
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.5e-11 74.3 118 39.8
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 4.5e-11 74.3 134 35.8
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 4.5e-11 74.3 81 45.7
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 5.9e-11 73.9 69 49.3
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 5.9e-11 73.9 69 50.7
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 5.9e-11 73.9 118 37.3
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 7.8e-11 73.6 83 45.8
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 7.8e-11 73.6 95 43.2
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 7.8e-11 73.6 130 36.9
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 7.8e-11 73.6 107 42.1
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 1.0e-10 73.2 82 45.1
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.0e-10 73.2 84 45.2
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 1.0e-10 73.2 115 40.0
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.7e-10 72.4 93 44.1
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 1.7e-10 72.4 81 44.4
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.7e-10 72.4 78 46.2
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.7e-10 72.4 78 46.2
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 1.7e-10 72.4 129 35.7
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 1.7e-10 72.4 81 45.7
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 2.3e-10 72.0 66 48.5
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 2.3e-10 72.0 94 40.4
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 2.3e-10 72.0 101 42.6
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 2.9e-10 71.6 65 50.8
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 2.9e-10 71.6 65 50.8
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 2.9e-10 71.6 81 44.4
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 2.9e-10 71.6 81 44.4
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 2.9e-10 71.6 96 43.8
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 2.9e-10 71.6 69 49.3
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 3.8e-10 71.2 146 31.5
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 3.8e-10 71.2 88 44.3
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 3.8e-10 71.2 84 41.7
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 5.0e-10 70.9 82 46.3
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 5.0e-10 70.9 116 37.9
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 5.0e-10 70.9 119 39.5
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 5.0e-10 70.9 95 41.1
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 5.0e-10 70.9 110 40.0
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 5.0e-10 70.9 81 45.7
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 5.0e-10 70.9 152 32.9
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 6.6e-10 70.5 233 27.0
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 6.6e-10 70.5 119 39.5
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 8.6e-10 70.1 102 41.2
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.1e-09 69.7 101 40.6
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.1e-09 69.7 101 40.6
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 1.1e-09 69.7 101 40.6
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.1e-09 69.7 90 45.6
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 1.1e-09 69.7 154 33.1
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 1.1e-09 69.7 72 45.8
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 1.1e-09 69.7 108 39.8
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.5e-09 69.3 88 40.9
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 1.5e-09 69.3 83 45.8
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 1.5e-09 69.3 89 40.4
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 1.5e-09 69.3 107 40.2
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 2.5e-09 68.6 79 45.6
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 2.5e-09 68.6 92 42.4
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 2.5e-09 68.6 92 42.4
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 3.3e-09 68.2 82 40.2
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 3.3e-09 68.2 54 50.0
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 3.3e-09 68.2 105 37.1
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 3.3e-09 68.2 121 35.5
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 3.3e-09 68.2 121 35.5
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 3.3e-09 68.2 80 43.8
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 4.3e-09 67.8 83 43.4
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 4.3e-09 67.8 83 44.6
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 4.3e-09 67.8 66 51.5
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 4.3e-09 67.8 80 42.5
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 5.6e-09 67.4 73 43.8
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 5.6e-09 67.4 183 30.1
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 7.3e-09 67.0 80 42.5
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 7.3e-09 67.0 79 45.6
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 9.5e-09 66.6 75 46.7
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 9.5e-09 66.6 75 46.7
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 9.5e-09 66.6 75 46.7
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 9.5e-09 66.6 75 46.7
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 9.5e-09 66.6 75 46.7
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 1.2e-08 66.2 80 42.5
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.2e-08 66.2 203 28.1
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 1.6e-08 65.9 146 34.2
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 1.6e-08 65.9 142 33.1
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 1.6e-08 65.9 80 43.8
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.6e-08 65.9 56 50.0
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 2.1e-08 65.5 80 42.5
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 2.8e-08 65.1 115 34.8
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 2.8e-08 65.1 125 38.4
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 2.8e-08 65.1 79 44.3
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 3.6e-08 64.7 80 43.8
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 3.6e-08 64.7 166 31.3
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 4.7e-08 64.3 107 38.3
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 4.7e-08 64.3 95 41.1
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 4.7e-08 64.3 82 42.7
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 6.1e-08 63.9 144 34.0
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 6.1e-08 63.9 73 45.2
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 6.1e-08 63.9 86 39.5
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 1.0e-07 63.2 100 38.0
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 1.0e-07 63.2 100 38.0
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.8e-07 62.4 86 43.0
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 1.8e-07 62.4 101 37.6
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.8e-07 62.4 105 36.2
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 2.3e-07 62.0 181 30.9
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 3.0e-07 61.6 115 37.4
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 3.0e-07 61.6 95 40.0
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 3.0e-07 61.6 181 30.9
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 3.0e-07 61.6 110 35.5
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 4.0e-07 61.2 154 31.8
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 4.0e-07 61.2 120 35.0
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 4.0e-07 61.2 258 28.3
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 5.2e-07 60.8 78 39.7
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 5.2e-07 60.8 82 39.0
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 6.8e-07 60.5 146 30.1
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 6.8e-07 60.5 71 42.3
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.5e-06 59.3 180 31.7
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 2.6e-06 58.5 108 35.2
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.6e-06 58.5 101 37.6
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.4e-06 58.2 95 38.9
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 4.4e-06 57.8 155 31.0
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 5.7e-06 57.4 77 37.7
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 5.7e-06 57.4 123 34.1
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 5.7e-06 57.4 166 30.7
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 5.7e-06 57.4 166 30.7
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 7.5e-06 57.0 215 29.3
TPR.G9173 Trifolium pratense HOM05D000004 ORTHO05D000002 7.5e-06 57.0 75 42.7


User provided reference genes

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