Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 0.0e+00 1201.0 622 100.0
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.4e-190 667.9 643 60.5
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 5.2e-127 459.1 638 46.1
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.5e-126 457.6 650 44.9
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 6.6e-122 442.2 640 44.4
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.5e-113 414.5 648 42.7
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.2e-108 396.4 680 42.5
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.4e-108 396.0 670 41.8
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 5.4e-108 396.0 675 41.9
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.1e-108 395.6 670 41.8
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.5e-107 393.3 670 41.8
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 6.0e-107 392.5 674 41.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.8e-106 391.0 673 41.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-106 391.0 670 41.5
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 5.1e-106 389.4 675 41.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 4.3e-105 386.3 669 41.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 5.6e-105 386.0 676 42.3
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 9.6e-105 385.2 670 42.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.3e-104 384.8 672 41.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.6e-104 384.4 677 41.2
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.8e-104 383.6 678 41.4
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.2e-104 382.5 675 40.3
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 6.2e-104 382.5 679 41.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 4.0e-103 379.8 668 41.0
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.0e-103 379.8 676 41.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.0e-103 379.8 671 40.4
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 4.0e-103 379.8 674 40.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.0e-103 378.6 665 40.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 5.8e-102 375.9 678 40.6
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.6e-102 375.6 671 40.5
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 7.6e-102 375.6 670 40.6
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.9e-102 375.2 668 40.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.3e-101 374.8 668 41.2
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.2e-101 374.0 658 41.9
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.9e-101 373.6 673 40.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.9e-101 373.6 675 41.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 3.8e-101 373.2 669 40.5
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 3.8e-101 373.2 674 40.7
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 3.8e-101 373.2 668 40.0
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.9e-101 372.9 667 40.9
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.9e-101 372.9 672 42.1
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 4.9e-101 372.9 676 40.1
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 8.4e-101 372.1 684 39.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 8.4e-101 372.1 685 39.1
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.9e-100 370.9 662 41.2
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.1e-100 369.0 677 41.1
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 9.3e-100 368.6 675 39.7
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.2e-99 368.2 630 40.5
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.6e-99 367.9 677 41.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 2.1e-99 367.5 609 40.4
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 3.5e-99 366.7 678 39.8
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 3.5e-99 366.7 685 39.1
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.5e-99 366.7 677 41.1
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 3.5e-99 366.7 678 40.3
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.0e-98 365.2 645 39.8
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.3e-98 364.8 678 39.4
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.8e-98 364.4 671 40.7
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.3e-98 364.0 672 40.0
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.3e-98 364.0 661 38.4
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 2.3e-98 364.0 673 38.8
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.0e-98 363.6 658 40.3
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.1e-98 362.8 680 39.1
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 6.7e-98 362.5 683 40.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 6.7e-98 362.5 670 40.9
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 8.7e-98 362.1 663 40.7
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 8.7e-98 362.1 681 37.4
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.5e-97 361.3 657 40.2
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.5e-97 361.3 692 39.5
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.9e-97 360.9 671 39.2
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-97 360.5 668 40.0
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 3.3e-97 360.1 661 41.3
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.3e-97 360.1 659 41.4
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 5.6e-97 359.4 658 40.3
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.6e-96 357.8 660 40.2
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.6e-96 357.8 672 39.0
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.6e-96 357.8 672 39.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.1e-96 357.5 652 40.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 3.7e-96 356.7 665 40.6
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 6.2e-96 355.9 675 39.9
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 8.2e-96 355.5 658 37.7
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.1e-95 355.1 651 38.9
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.8e-95 354.4 646 39.3
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 2.4e-95 354.0 659 40.7
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.4e-95 354.0 662 37.8
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 4.0e-95 353.2 656 37.7
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 4.0e-95 353.2 656 37.7
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 6.9e-95 352.4 643 38.7
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.0e-93 348.6 673 39.4
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.0e-93 348.6 660 38.6
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.0e-93 348.6 652 38.0
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.7e-93 347.8 671 37.4
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.9e-93 347.1 666 39.6
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 6.5e-93 345.9 652 38.8
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 6.5e-93 345.9 667 37.3
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 6.5e-93 345.9 653 38.9
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.1e-92 345.1 670 37.9
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.9e-92 344.4 644 38.2
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.9e-92 344.4 653 40.4
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-92 344.4 651 38.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.2e-92 343.6 663 38.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 4.2e-92 343.2 663 38.2
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 5.5e-92 342.8 699 39.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.1e-92 342.4 677 38.1
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 9.3e-92 342.0 671 38.3
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-91 341.7 658 39.2
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 2.1e-91 340.9 671 36.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.5e-91 340.1 656 37.7
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.5e-91 340.1 671 36.7
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.0e-90 338.6 661 38.9
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.3e-90 338.2 566 41.0
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.3e-90 338.2 656 39.3
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.9e-89 334.3 688 39.5
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 9.7e-89 332.0 541 44.9
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.2e-88 330.9 672 35.1
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 2.8e-88 330.5 649 38.5
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 8.2e-88 328.9 671 39.0
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.4e-87 327.4 690 39.1
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.1e-87 327.0 663 38.3
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 4.1e-87 326.6 676 38.3
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 6.9e-87 325.9 696 35.9
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.2e-86 325.1 560 39.6
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 2.0e-86 324.3 663 37.3
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.7e-86 322.4 669 36.0
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 7.7e-86 322.4 675 34.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.0e-85 322.0 670 38.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.7e-85 321.2 667 34.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.2e-85 320.9 673 37.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.2e-85 320.9 677 36.6
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.8e-85 320.1 620 40.0
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 6.5e-85 319.3 690 37.8
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 6.5e-85 319.3 545 41.7
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.5e-85 318.9 553 40.5
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.5e-85 318.9 553 40.5
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.4e-84 318.2 678 37.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 4.2e-84 316.6 685 35.5
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.6e-83 314.7 652 37.3
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 3.6e-83 313.5 581 38.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 4.6e-83 313.2 679 35.1
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 6.1e-83 312.8 688 35.6
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.8e-82 311.2 680 36.8
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-82 310.8 622 38.7
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 5.1e-82 309.7 573 38.9
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.4e-81 305.8 678 36.9
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.8e-79 301.2 570 37.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 5.3e-79 299.7 562 39.0
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.7e-78 295.8 547 39.9
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.9e-77 293.9 654 35.9
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.0e-77 293.1 666 34.5
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.5e-76 290.8 675 33.8
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.3e-74 284.3 534 37.1
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.8e-72 277.3 646 35.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 7.2e-68 262.7 661 33.6
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.6e-62 244.2 415 40.2
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 4.2e-60 236.9 404 42.3
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.4e-57 226.9 414 40.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.7e-54 217.6 407 39.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 4.4e-49 200.3 595 33.4
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.7e-46 191.0 399 33.6
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.1e-44 185.7 317 40.1
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 9.8e-33 146.0 270 35.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 9.2e-31 139.4 652 26.4
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.6e-30 138.7 268 36.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 3.0e-29 134.4 621 27.5
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.7e-24 117.5 217 40.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 4.9e-24 117.1 120 50.8
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-19 101.3 106 50.0
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 3.2e-15 87.8 280 27.1
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 7.1e-15 86.7 134 38.8
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.1e-13 80.5 215 35.3
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.4e-10 72.4 59 52.5
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 3.1e-10 71.2 48 66.7
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.0e-10 70.9 75 50.7
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 4.0e-10 70.9 245 25.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 2.2e-08 65.1 386 22.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.7e-06 58.2 67 49.3


User provided reference genes

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