Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 0.0e+00 2991.1 1535 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 0.0e+00 1154.4 1541 43.5
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 0.0e+00 1100.9 1536 42.8
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.1e-255 887.9 1536 37.9
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 3.3e-255 886.3 1541 36.7
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 8.9e-253 878.2 1527 36.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 7.8e-249 865.1 1426 38.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 1.3e-248 864.4 1547 36.3
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.8e-245 854.0 1538 35.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 6.8e-245 852.0 1545 36.6
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 5.8e-244 849.0 1540 36.0
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 9.3e-242 841.6 1534 36.4
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 1.2e-241 841.3 1545 35.5
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 5.6e-239 832.4 1543 36.2
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 2.1e-238 830.5 1540 35.5
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 8.1e-238 828.6 1532 35.5
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 5.3e-237 825.9 1545 35.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 9.0e-237 825.1 1535 35.4
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 1.5e-236 824.3 1543 35.8
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.0e-236 823.9 1545 36.2
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 3.8e-235 819.7 1566 35.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.1e-234 818.1 1534 35.0
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-234 817.8 1562 35.2
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-234 817.8 1562 35.2
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 1.9e-234 817.4 1542 34.9
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 3.2e-234 816.6 1548 35.3
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.3e-234 815.1 1153 42.5
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 2.7e-233 813.5 1538 35.5
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 4.6e-233 812.8 1541 35.9
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 3.9e-232 809.7 1571 35.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.1e-231 808.1 1558 35.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 1.5e-231 807.7 1485 36.0
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 1.9e-231 807.4 1549 35.1
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 1.9e-231 807.4 1557 35.3
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.8e-230 802.7 1526 35.6
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 4.8e-230 802.7 1543 35.2
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 9.0e-229 798.5 1535 35.1
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 2.0e-228 797.3 1562 35.0
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 2.6e-228 797.0 1534 34.6
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 4.5e-228 796.2 1584 35.0
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 3.8e-227 793.1 1543 35.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 8.4e-227 792.0 1467 35.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 7.1e-226 788.9 1543 34.6
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-225 787.7 1543 35.1
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 2.7e-225 786.9 1544 34.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 2.3e-224 783.9 1537 34.5
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.3e-223 780.0 1534 34.6
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 3.1e-221 773.5 1550 35.2
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 9.0e-221 771.9 1555 34.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 3.4e-220 770.0 1535 35.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 4.5e-220 769.6 1544 35.1
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.3e-219 768.1 1528 34.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 1.3e-219 768.1 1543 34.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 1.7e-219 767.7 1543 34.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 7.1e-218 762.3 1569 33.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 1.8e-216 757.7 1646 33.5
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 3.9e-216 756.5 1545 34.4
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 2.5e-215 753.8 1536 34.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 4.3e-215 753.1 1565 33.6
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 2.1e-214 750.7 1540 34.3
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 9.0e-213 745.3 1540 34.0
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 2.0e-212 744.2 1560 34.1
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.3e-211 741.5 1558 34.5
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 1.7e-211 741.1 1543 33.8
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 2.9e-211 740.3 1539 33.9
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 3.6e-209 733.4 1536 33.9
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 2.3e-208 730.7 1533 33.5
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 3.9e-208 729.9 1549 33.4
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 3.3e-207 726.9 1500 34.1
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 5.7e-207 726.1 1534 33.0
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 1.3e-206 724.9 1566 33.6
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 9.0e-205 718.8 1546 33.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 2.0e-204 717.6 1321 35.6
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 2.6e-204 717.2 1560 32.4
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.7e-203 714.5 1546 33.6
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 6.5e-203 712.6 1545 32.8
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 5.5e-202 709.5 1547 32.8
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 7.9e-201 705.7 1549 32.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 1.0e-200 705.3 1550 32.5
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 1.8e-200 704.5 1212 37.6
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 2.3e-200 704.1 1554 33.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 8.8e-200 702.2 1549 32.7
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 3.1e-197 693.7 1576 32.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 5.3e-197 693.0 1577 32.0
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 5.3e-197 693.0 1274 35.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 4.5e-196 689.9 1126 38.5
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 1.3e-195 688.3 1544 33.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 1.9e-186 657.9 1331 34.0
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 4.2e-186 656.8 1157 36.6
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.0e-185 652.5 1580 31.2
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.8e-184 651.4 1585 31.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.3e-183 647.1 1781 29.3
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 9.1e-181 639.0 1156 36.1
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.7e-177 627.5 1420 33.3
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-173 615.1 1136 35.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 3.1e-173 614.0 1007 38.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.5e-170 605.1 1176 34.2
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.3e-163 582.0 996 38.3
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.1e-129 468.4 594 45.3
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-118 431.8 1058 30.3
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.1e-113 415.2 574 42.7
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.4e-112 411.8 596 41.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 9.0e-112 409.8 614 40.2
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.1e-108 398.7 1040 31.3
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.1e-96 358.2 625 37.9
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.2e-89 335.5 585 37.3
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.9e-85 322.4 901 28.7
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-83 315.5 485 39.2
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 6.7e-83 313.9 1042 27.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.4e-82 311.2 1044 27.2
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.7e-81 309.3 613 33.8
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.7e-81 308.1 1045 27.1
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 8.0e-76 290.4 654 32.9
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.4e-75 289.7 550 35.1
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 2.2e-62 245.7 360 39.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.0e-60 237.3 359 41.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.3e-54 219.9 570 31.1
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.4e-50 205.3 239 45.6
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-39 170.2 504 28.2
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.6e-36 159.8 317 32.8
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 2.3e-35 156.0 445 28.3
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.5e-34 153.3 335 33.7
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.2e-31 143.7 175 41.7
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-30 139.8 267 37.1
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.5e-29 136.0 162 42.6
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 2.3e-27 129.4 1826 21.3
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 4.0e-27 128.6 270 34.8
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 8.9e-27 127.5 323 29.4
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 2.6e-26 125.9 288 31.2
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.7e-25 123.2 311 31.5
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-23 116.3 241 29.9
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.7e-22 113.2 102 59.8
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.0e-22 112.5 392 25.8
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-21 110.5 129 39.5
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.5e-21 110.2 299 30.4
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 4.7e-20 105.1 147 41.5
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-19 103.6 205 34.1
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.1e-19 102.4 652 23.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 4.0e-19 102.1 133 42.9
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 6.8e-19 101.3 119 40.3
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.9e-16 93.2 120 35.8
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.2e-16 92.4 109 40.4
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 9.2e-16 90.9 123 40.7
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-15 90.5 260 31.5
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.7e-15 89.4 216 31.9
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.7e-14 86.7 239 31.8
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.9e-13 83.2 188 29.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.6e-12 80.1 468 23.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 8.1e-12 77.8 178 27.0
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-11 75.9 172 30.8
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.0e-11 75.5 195 30.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 2.9e-09 69.3 473 22.0
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 2.9e-09 69.3 179 29.6
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.6e-07 63.5 190 30.5
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.0e-06 60.8 109 31.2
CBR_g55213 Chara braunii HOM05D001082 ORTHO05D005120 6.6e-06 58.2 87 37.9
SEGI_12379 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.6e-06 58.2 73 42.5


User provided reference genes

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