Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0006 Marchantia polymorpha HOM05D001911 ORTHO05D001951 7.0e-144 513.8 244 100.0
Mapoly0359s0001 Marchantia polymorpha HOM05D001911 ORTHO05D001951 4.6e-26 122.5 139 46.8
Pp3c1_22180 Physcomitrium patens HOM05D001911 ORTHO05D001951 6.8e-14 82.0 115 38.3
Pp3c1_22185 Physcomitrium patens HOM05D001911 ORTHO05D001951 6.8e-14 82.0 115 38.3
Cc01_g05320 Coffea canephora HOM05D001911 ORTHO05D001951 1.5e-13 80.9 121 36.4
EL10Ac4g10329 Beta vulgaris HOM05D001911 ORTHO05D001951 3.4e-13 79.7 119 35.3
Sp6g36080 Schrenkiella parvula HOM05D001911 ORTHO05D001951 3.4e-13 79.7 123 38.2
Manes.15G103200 Manihot esculenta HOM05D001911 ORTHO05D001951 5.8e-13 79.0 120 37.5
Migut.N02282 Erythranthe guttata HOM05D001911 ORTHO05D001951 7.5e-13 78.6 124 36.3
Sabra01G0009600 Salix brachista HOM05D001911 ORTHO05D001951 7.5e-13 78.6 120 36.7
SMO367G0960 Selaginella moellendorffii HOM05D001911 ORTHO05D001951 1.3e-12 77.8 117 37.6
ClCG10G017470 Citrullus lanatus HOM05D001911 ORTHO05D001951 1.7e-12 77.4 122 34.4
MELO3C009632.2 Cucumis melo HOM05D001911 ORTHO05D001951 1.7e-12 77.4 172 29.7
Lj1P442T6 Lonicera japonica HOM05D001911 ORTHO05D001951 1.7e-12 77.4 122 35.2
Potri.001G013200 Populus trichocarpa HOM05D001911 ORTHO05D001951 1.7e-12 77.4 120 36.7
MSTRG.18399 Avicennia marina HOM05D001911 ORTHO05D001951 2.2e-12 77.0 120 35.0
Sabra03G0159200 Salix brachista HOM05D001911 ORTHO05D001951 2.2e-12 77.0 120 35.8
CDE07G0529 Ceratophyllum demersum HOM05D001911 ORTHO05D001951 2.9e-12 76.6 128 35.9
Phvul.007G002700 Phaseolus vulgaris HOM05D001911 ORTHO05D001951 2.9e-12 76.6 120 35.0
THA.LOC104799299 Tarenaya hassleriana HOM05D001911 ORTHO05D001951 2.9e-12 76.6 120 33.3
TWI60G1131 Tripterygium wilfordii HOM05D001911 ORTHO05D001951 2.9e-12 76.6 121 35.5
Atru.chr3.2412 Acer truncatum HOM05D001911 ORTHO05D001951 3.7e-12 76.3 116 37.1
AL6G16880 Arabidopsis lyrata HOM05D001911 ORTHO05D001951 3.7e-12 76.3 120 35.0
arahy.Tifrunner.gnm1.ann1.932KHQ Arachis hypogaea HOM05D001911 ORTHO05D001951 3.7e-12 76.3 119 33.6
arahy.Tifrunner.gnm1.ann1.GD0UEJ Arachis hypogaea HOM05D001911 ORTHO05D001951 3.7e-12 76.3 119 33.6
MSTRG.17561 Avicennia marina HOM05D001911 ORTHO05D001951 3.7e-12 76.3 117 34.2
CDE06G1814 Ceratophyllum demersum HOM05D001911 ORTHO05D001951 3.7e-12 76.3 128 35.9
Ciclev10016092m.g Citrus clementina HOM05D001911 ORTHO05D001951 3.7e-12 76.3 117 35.9
ECA233G4448 Erigeron canadensis HOM05D001911 ORTHO05D001951 3.7e-12 76.3 121 34.7
VMungo0720G0038 Vigna mungo HOM05D001911 ORTHO05D001951 3.7e-12 76.3 120 34.2
AUR62000047 Chenopodium quinoa HOM05D001911 ORTHO05D001951 4.9e-12 75.9 127 31.5
AUR62019220 Chenopodium quinoa HOM05D001911 ORTHO05D001951 4.9e-12 75.9 127 31.5
Ca_11415_v3 Cicer arietinum L. HOM05D001911 ORTHO05D001951 4.9e-12 75.9 120 35.8
CsaV3_3G038890 Cucumis sativus L. HOM05D001911 ORTHO05D001951 4.9e-12 75.9 122 33.6
Mapoly0005s0287 Marchantia polymorpha HOM05D001911 ORTHO05D001951 4.9e-12 75.9 118 34.7
Oeu043774.1 Olea europaea HOM05D001911 ORTHO05D001951 4.9e-12 75.9 120 35.0
Potri.003G213200 Populus trichocarpa HOM05D001911 ORTHO05D001951 4.9e-12 75.9 120 35.8
Actinidia39370 Actinidia chinensis HOM05D001911 ORTHO05D001951 6.4e-12 75.5 127 34.6
Aqoxy1G00034 Aquilegia oxysepala HOM05D001911 ORTHO05D001951 6.4e-12 75.5 122 33.6
Dinv43489 Davidia involucrata HOM05D001911 ORTHO05D001951 6.4e-12 75.5 121 34.7
Glyma.20G247500 Glycine max HOM05D001911 ORTHO05D001951 6.4e-12 75.5 120 32.5
HanXRQChr02g0056681 Helianthus annuus HOM05D001911 ORTHO05D001951 6.4e-12 75.5 134 32.1
Mapoly0031s0160 Marchantia polymorpha HOM05D001911 ORTHO05D001951 6.4e-12 75.5 115 36.5
GSVIVG01025360001 Vitis vinifera HOM05D001911 ORTHO05D001951 6.4e-12 75.5 120 34.2
AT5G06770 Arabidopsis thaliana HOM05D001911 ORTHO05D001951 8.3e-12 75.1 120 35.0
Rhsim13G0226700 Rhododendron simsii HOM05D001911 ORTHO05D001951 8.3e-12 75.1 124 32.3
Mapoly0012s0190 Marchantia polymorpha HOM05D000200 ORTHO05D000262 1.1e-11 74.7 116 37.1
Oeu046510.1 Olea europaea HOM05D001911 ORTHO05D001951 1.1e-11 74.7 120 34.2
THA.LOC104826768 Tarenaya hassleriana HOM05D001911 ORTHO05D001951 1.1e-11 74.7 126 34.9
Actinidia06311 Actinidia chinensis HOM05D001911 ORTHO05D001951 1.4e-11 74.3 128 35.2
Lsat_1_v5_gn_6_50740 Lactuca sativa HOM05D001911 ORTHO05D001951 1.4e-11 74.3 143 30.8
Lj5g0007151 Lotus japonicus HOM05D001911 ORTHO05D001951 1.4e-11 74.3 120 36.7
Psat0s2492g0080 Pisum sativum HOM05D001911 ORTHO05D001951 1.4e-11 74.3 122 32.8
Peaxi162Scf00780g00412 Petunia axillaris HOM05D001911 ORTHO05D001951 1.9e-11 73.9 122 33.6
TPR.G27748 Trifolium pratense HOM05D001911 ORTHO05D001951 1.9e-11 73.9 140 30.7
Cpa.g.sc235.4 Carica papaya HOM05D001911 ORTHO05D001951 2.4e-11 73.6 121 33.1
Glyma.10G296700 Glycine max HOM05D001911 ORTHO05D001951 2.4e-11 73.6 120 31.7
Lalb_Chr06g0164531 Lupinus albus HOM05D001911 ORTHO05D001951 2.4e-11 73.6 121 33.1
DCAR_002027 Daucus carota HOM05D001911 ORTHO05D001951 3.2e-11 73.2 120 30.8
HanXRQChr13g0404211 Helianthus annuus HOM05D001911 ORTHO05D001951 3.2e-11 73.2 120 34.2
Lsat_1_v5_gn_1_110800 Lactuca sativa HOM05D001911 ORTHO05D001951 3.2e-11 73.2 144 29.9
PGR142G2667 Punica granatum HOM05D001911 ORTHO05D001951 3.2e-11 73.2 122 33.6
Cpa.g.sc235.5 Carica papaya HOM05D001911 ORTHO05D001951 4.1e-11 72.8 121 33.1
Lalb_Chr02g0144451 Lupinus albus HOM05D001911 ORTHO05D001951 4.1e-11 72.8 121 32.2
Pp3c15_24050 Physcomitrium patens HOM05D001911 ORTHO05D001951 4.1e-11 72.8 115 33.9
Sed0012762 Sechium edule HOM05D001911 ORTHO05D001951 4.1e-11 72.8 117 31.6
Actinidia16283 Actinidia chinensis HOM05D001911 ORTHO05D001951 5.4e-11 72.4 122 32.0
Carub.0006s0566 Capsella rubella HOM05D001911 ORTHO05D001951 5.4e-11 72.4 120 32.5
Prupe.6G014800 Prunus persica HOM05D001911 ORTHO05D001951 5.4e-11 72.4 123 32.5
Thecc.05G170700 Theobroma cacao HOM05D001911 ORTHO05D001951 5.4e-11 72.4 121 33.9
Thecc.09G218200 Theobroma cacao HOM05D001911 ORTHO05D001951 5.4e-11 72.4 120 33.3
PGR119G1506 Punica granatum HOM05D001911 ORTHO05D001951 7.1e-11 72.0 120 33.3
Rhsim01G0186700 Rhododendron simsii HOM05D001911 ORTHO05D001951 7.1e-11 72.0 129 33.3
THA.LOC104809931 Tarenaya hassleriana HOM05D001911 ORTHO05D001951 7.1e-11 72.0 124 32.3
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 9.2e-11 71.6 122 32.0
Haze_23017 Corylus avellana HOM05D001911 ORTHO05D001951 9.2e-11 71.6 122 32.0
DCAR_029604 Daucus carota HOM05D001911 ORTHO05D001951 9.2e-11 71.6 122 34.4
Gohir.A05G066716 Gossypium hirsutum HOM05D001911 ORTHO05D001951 9.2e-11 71.6 120 35.0
Gohir.D05G069300 Gossypium hirsutum HOM05D001911 ORTHO05D001951 9.2e-11 71.6 120 35.0
Gorai.009G070300 Gossypium raimondii HOM05D001911 ORTHO05D001951 9.2e-11 71.6 120 35.0
TWI34G1208 Tripterygium wilfordii HOM05D001911 ORTHO05D001951 9.2e-11 71.6 118 33.1
Dinv08065 Davidia involucrata HOM05D001911 ORTHO05D001951 1.2e-10 71.2 120 33.3
RcHm_v2.0_Chr5g0080561 Rosa chinensis HOM05D001911 ORTHO05D001951 1.2e-10 71.2 120 31.7
SalBow5G5488 Salvia bowleyana HOM05D001911 ORTHO05D001951 1.2e-10 71.2 151 29.8
CARHR206410 Cardamine hirsuta HOM05D001911 ORTHO05D001951 1.6e-10 70.9 123 35.0
Duzib093G1204 Durio zibethinus HOM05D001911 ORTHO05D001951 1.6e-10 70.9 121 33.1
Eucgr.B02591 Eucalyptus grandis HOM05D001911 ORTHO05D001951 1.6e-10 70.9 118 32.2
Sc19g0007010 Simmondsia chinensis HOM05D001911 ORTHO05D001951 1.6e-10 70.9 121 33.9
PGSC0003DMG400024054 Solanum tuberosum HOM05D001911 ORTHO05D001951 1.6e-10 70.9 117 33.3
Duzib168G1611 Durio zibethinus HOM05D001911 ORTHO05D001951 2.1e-10 70.5 120 32.5
Lj9P623T25 Lonicera japonica HOM05D001911 ORTHO05D001951 2.1e-10 70.5 119 32.8
Sopen01g009840 Solanum pennellii HOM05D001911 ORTHO05D001951 2.1e-10 70.5 116 31.9
FAN25G0534 Fragaria x ananassa HOM05D001911 ORTHO05D001951 2.7e-10 70.1 121 31.4
PGSC0003DMG400011414 Solanum tuberosum HOM05D001911 ORTHO05D001951 2.7e-10 70.1 148 30.4
SGA_v2.0_scaffold1G00766 Striga asiatica HOM05D001911 ORTHO05D001951 2.7e-10 70.1 125 32.0
Lalb_Chr21g0307661 Lupinus albus HOM05D001911 ORTHO05D001951 3.5e-10 69.7 121 32.2
SHI30492 Sapria himalayana HOM05D001911 ORTHO05D001951 3.5e-10 69.7 125 35.2
unitig_26.g10123 Utricularia gibba HOM05D001911 ORTHO05D001951 3.5e-10 69.7 122 33.6
CARHR086690 Cardamine hirsuta HOM05D001911 ORTHO05D001951 4.6e-10 69.3 122 33.6
ECA234G3121 Erigeron canadensis HOM05D001911 ORTHO05D001951 4.6e-10 69.3 123 35.0
FvH4_3g44210 Fragaria vesca HOM05D001911 ORTHO05D001951 4.6e-10 69.3 121 30.6
FAN11G3860 Fragaria x ananassa HOM05D001911 ORTHO05D001951 4.6e-10 69.3 121 30.6
FAN16G2649 Fragaria x ananassa HOM05D001911 ORTHO05D001951 4.6e-10 69.3 121 30.6
FAN21G1276 Fragaria x ananassa HOM05D001911 ORTHO05D001951 4.6e-10 69.3 121 30.6
QL01p009715 Quercus lobata HOM05D001911 ORTHO05D001951 4.6e-10 69.3 120 33.3
GSVIVG01001369001 Vitis vinifera HOM05D001911 ORTHO05D001951 4.6e-10 69.3 118 31.4
COL.COLO4_36164 Corchorus olitorius HOM05D001911 ORTHO05D001951 6.0e-10 68.9 124 33.1
Hma1.2p1_1169F.1_g263200 Hydrangea macrophylla HOM05D001911 ORTHO05D001951 6.0e-10 68.9 123 31.7
Hma1.2p1_1169F.1_g263210 Hydrangea macrophylla HOM05D001911 ORTHO05D001951 6.0e-10 68.9 123 31.7
Hma1.2p1_1806F.1_g303266 Hydrangea macrophylla HOM05D001911 ORTHO05D001951 6.0e-10 68.9 123 31.7
Hma1.2p1_1806F.1_g303268 Hydrangea macrophylla HOM05D001911 ORTHO05D001951 6.0e-10 68.9 123 31.7
Aa31LG3G6300 Aethionema arabicum HOM05D001911 ORTHO05D001951 7.8e-10 68.6 135 31.1
Sp3g10360 Schrenkiella parvula HOM05D001911 ORTHO05D001951 7.8e-10 68.6 129 31.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.0e-09 68.2 123 33.3
C05p55680 Brassica napus HOM05D001911 ORTHO05D001951 1.0e-09 68.2 125 32.8
BolC5t34236H Brassica oleracea HOM05D001911 ORTHO05D001951 1.0e-09 68.2 125 32.8
DCAR_024990 Daucus carota HOM05D001911 ORTHO05D001951 1.0e-09 68.2 122 31.1
vmacro21748 Vaccinium macrocarpon HOM05D001911 ORTHO05D001951 1.0e-09 68.2 126 30.2
Zm00001eb275730 Zea mays HOM05D001911 ORTHO05D001951 1.0e-09 68.2 127 32.3
AL3G23760 Arabidopsis lyrata HOM05D001911 ORTHO05D001951 1.3e-09 67.8 126 32.5
Dinv36319 Davidia involucrata HOM05D001911 ORTHO05D001951 1.3e-09 67.8 122 32.0
Medtr1g116940 Medicago truncatula HOM05D001911 ORTHO05D001951 1.3e-09 67.8 119 32.8
unitig_8.g3762 Utricularia gibba HOM05D001911 ORTHO05D001951 1.3e-09 67.8 120 34.2
A05p37220 Brassica napus HOM05D001911 ORTHO05D001951 1.7e-09 67.4 127 32.3
BraA05t22518Z Brassica rapa HOM05D001911 ORTHO05D001951 1.7e-09 67.4 127 32.3
COL.COLO4_30781 Corchorus olitorius HOM05D001911 ORTHO05D001951 1.7e-09 67.4 120 31.7
Thhalv10021405m.g Eutrema salsugineum HOM05D001911 ORTHO05D001951 1.7e-09 67.4 124 31.5
Nitab4.5_0004886g0010 Nicotiana tabacum HOM05D001911 ORTHO05D001951 1.7e-09 67.4 118 32.2
Os06g0618100 Oryza sativa ssp. japonica HOM05D001911 ORTHO05D001951 1.7e-09 67.4 121 32.2
THA.LOC104802520 Tarenaya hassleriana HOM05D001911 ORTHO05D001951 1.7e-09 67.4 114 34.2
BcaB04g21095 Brassica carinata HOM05D001911 ORTHO05D001951 2.3e-09 67.0 131 30.5
BcaB06g25540 Brassica carinata HOM05D001911 ORTHO05D001951 2.3e-09 67.0 118 32.2
BcaC09g48214 Brassica carinata HOM05D001911 ORTHO05D001951 2.3e-09 67.0 129 31.8
MD00G1203500 Malus domestica HOM05D001911 ORTHO05D001951 2.3e-09 67.0 121 31.4
BcaB06g25542 Brassica carinata HOM05D001911 ORTHO05D001951 3.0e-09 66.6 129 31.8
BolC1t05263H Brassica oleracea HOM05D001911 ORTHO05D001951 3.0e-09 66.6 130 31.5
BraA01t04135Z Brassica rapa HOM05D001911 ORTHO05D001951 3.0e-09 66.6 130 31.5
Carub.0003s1147 Capsella rubella HOM05D001911 ORTHO05D001951 3.0e-09 66.6 129 30.2
MD03G1016300 Malus domestica HOM05D001911 ORTHO05D001951 3.0e-09 66.6 122 31.1
Nitab4.5_0001512g0040 Nicotiana tabacum HOM05D001911 ORTHO05D001951 3.0e-09 66.6 118 31.4
TAR633G0858 Trochodendron aralioides HOM05D001911 ORTHO05D001951 3.0e-09 66.6 127 31.5
CiPaw.13G170100 Carya illinoinensis HOM05D001911 ORTHO05D001951 3.9e-09 66.2 118 32.2
Lsat_1_v5_gn_5_146141 Lactuca sativa HOM05D001911 ORTHO05D001951 3.9e-09 66.2 123 33.3
MD11G1017100 Malus domestica HOM05D001911 ORTHO05D001951 3.9e-09 66.2 121 30.6
Actinidia32336 Actinidia chinensis HOM05D001911 ORTHO05D001951 5.1e-09 65.9 133 30.1
BcaC01g04063 Brassica carinata HOM05D001227 ORTHO05D001082 5.1e-09 65.9 124 32.3
A03p37450 Brassica napus HOM05D001911 ORTHO05D001951 5.1e-09 65.9 124 32.3
BolC3t16812H Brassica oleracea HOM05D001911 ORTHO05D001951 5.1e-09 65.9 123 31.7
BraA03t12905Z Brassica rapa HOM05D001911 ORTHO05D001951 5.1e-09 65.9 124 32.3
Migut.B01362 Erythranthe guttata HOM05D001911 ORTHO05D001951 5.1e-09 65.9 134 29.9
MD12G1059600 Malus domestica HOM05D001911 ORTHO05D001951 6.6e-09 65.5 127 30.7
Nitab4.5_0000266g0050 Nicotiana tabacum HOM05D001911 ORTHO05D001951 6.6e-09 65.5 118 32.2
SGA_v2.0_scaffold260G45880 Striga asiatica HOM05D001911 ORTHO05D001951 6.6e-09 65.5 111 30.6
BcaB04g18696 Brassica carinata HOM05D001911 ORTHO05D001951 8.6e-09 65.1 125 31.2
C03p45460 Brassica napus HOM05D001911 ORTHO05D001951 8.6e-09 65.1 125 31.2
AT3G12130 Arabidopsis thaliana HOM05D001911 ORTHO05D001951 1.9e-08 63.9 128 27.3
Os02g0194200 Oryza sativa ssp. japonica HOM05D001911 ORTHO05D001951 1.9e-08 63.9 125 31.2
Cc05_g02250 Coffea canephora HOM05D001911 ORTHO05D001951 2.5e-08 63.5 115 30.4
Nitab4.5_0000346g0040 Nicotiana tabacum HOM05D001911 ORTHO05D001951 7.3e-08 62.0 118 29.7
ECA248G3671 Erigeron canadensis HOM05D001911 ORTHO05D001951 1.1e-06 58.2 134 30.6


User provided reference genes

Program Settings