Gene: AT3G12130

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G12130
  • Transcript Identifier AT3G12130.2
  • Gene Type Coding gene
  • Location Chr3 : 3864486-3865016 : negative

Gene Family Information

  • ID HOM05D001911
  • #Genes/#Species 344/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G12130.2
  • uniprot Q9C7C3

Descriptions

  • Description KH domain-containing protein / zinc finger (CCCH type) family protein
  • Computational description KH domain-containing protein / zinc finger (CCCH type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT5G06770.1); Has 1306 Blast hits to 1045 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 726; Fungi - 40; Plants - 423; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:1900057
IMP
Gene Ontologypositive regulation of leaf senescence2
GO:2000028
IGI
Gene Ontologyregulation of photoperiodism, flowering2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IDA
IEA
Gene OntologyRNA binding2
GO:0003723
IEA
InterProRNA binding
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036612 K Homology domain, type 1 superfamily
IPR000571 Zinc finger, CCCH-type
IPR036855 Zinc finger, CCCH-type superfamily
IPR004087 K Homology domain
IPR004088 K Homology domain, type 1
Mapman id Description
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)