Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 3.9e-162 574.7 287 100.0
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 2.6e-113 412.5 274 71.9
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 5.8e-105 384.8 278 66.9
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 3.8e-96 355.5 291 59.8
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 4.2e-95 352.1 294 59.5
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 9.3e-95 350.9 293 58.7
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 9.3e-95 350.9 293 59.4
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.2e-94 350.5 293 59.4
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.6e-94 350.1 292 58.9
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 2.1e-94 349.7 297 58.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 4.6e-94 348.6 295 57.3
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.3e-93 346.3 294 57.8
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.3e-93 346.3 296 58.1
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 6.6e-93 344.7 295 59.3
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 6.6e-93 344.7 294 58.5
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 6.6e-93 344.7 292 57.2
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 8.7e-93 344.4 296 58.1
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.9e-92 343.2 292 58.6
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.9e-92 343.2 294 57.8
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 7.3e-92 341.3 293 57.0
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 7.3e-92 341.3 290 59.0
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 9.6e-92 340.9 288 58.7
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.3e-91 340.5 294 56.8
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.3e-91 340.5 292 58.6
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 1.6e-91 340.1 294 57.1
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 2.1e-91 339.7 294 57.8
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.1e-91 339.7 291 57.7
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 2.1e-91 339.7 286 59.4
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 4.8e-91 338.6 293 56.3
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 8.1e-91 337.8 296 57.8
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 8.1e-91 337.8 296 56.1
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.1e-90 337.4 291 57.4
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 1.1e-90 337.4 294 56.8
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.4e-90 337.0 294 56.5
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.4e-90 337.0 285 58.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 1.4e-90 337.0 292 57.2
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.4e-90 336.3 295 56.9
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.4e-90 336.3 294 55.8
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.1e-90 335.9 290 57.2
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 3.1e-90 335.9 295 57.3
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 4.0e-90 335.5 291 56.4
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 6.9e-90 334.7 296 55.7
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.2e-89 334.0 294 55.8
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.2e-89 334.0 294 55.8
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.2e-89 334.0 297 56.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.2e-89 334.0 296 55.7
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.2e-89 334.0 290 56.9
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.5e-89 333.6 293 56.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 2.6e-89 332.8 289 57.8
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 3.4e-89 332.4 286 57.0
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 3.4e-89 332.4 291 56.7
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 4.5e-89 332.0 286 56.6
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.5e-89 332.0 295 55.3
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 4.5e-89 332.0 294 56.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 5.8e-89 331.6 293 56.3
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 5.8e-89 331.6 291 57.0
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 5.8e-89 331.6 270 58.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 5.8e-89 331.6 294 55.1
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 7.6e-89 331.3 302 56.6
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.6e-89 331.3 292 56.2
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 7.6e-89 331.3 291 56.4
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 7.6e-89 331.3 293 55.6
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 9.9e-89 330.9 227 67.0
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 9.9e-89 330.9 291 56.7
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 9.9e-89 330.9 291 56.4
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.3e-88 330.5 238 64.7
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.7e-88 330.1 291 57.0
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.7e-88 330.1 291 57.4
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 2.9e-88 329.3 291 57.0
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 2.9e-88 329.3 291 57.0
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 3.8e-88 328.9 246 63.4
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 4.9e-88 328.6 291 56.7
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 4.9e-88 328.6 291 56.7
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 4.9e-88 328.6 291 56.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.9e-88 328.6 283 58.0
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 6.4e-88 328.2 290 54.8
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 6.4e-88 328.2 291 56.7
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 8.4e-88 327.8 293 57.0
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.4e-87 327.0 295 54.2
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 3.2e-87 325.9 292 55.5
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 5.4e-87 325.1 223 65.9
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 7.1e-87 324.7 291 56.0
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 1.2e-86 323.9 292 55.1
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.2e-86 323.9 294 55.4
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 3.5e-86 322.4 293 55.3
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 4.6e-86 322.0 292 55.1
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 4.6e-86 322.0 292 54.1
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.9e-84 316.6 321 51.4
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.9e-84 316.6 325 50.8
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.3e-83 313.9 254 60.2
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.4e-82 310.5 323 50.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.1e-82 309.3 288 55.9
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 2.9e-80 302.8 288 53.5
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 2.9e-80 302.8 263 60.1
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 4.9e-80 302.0 211 66.4
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.9e-79 300.1 306 51.0
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 2.8e-75 286.2 265 54.7
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 4.8e-75 285.4 232 59.5
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.5e-73 280.4 266 53.0
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 7.6e-73 278.1 267 53.6
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 6.0e-70 268.5 243 56.0
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 2.0e-57 226.9 284 44.0
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 3.0e-53 213.0 239 44.4
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 5.1e-53 212.2 205 54.1
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 7.4e-52 208.4 277 45.5
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 6.3e-51 205.3 190 58.9
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.6e-49 199.9 406 34.7
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 2.2e-43 180.3 146 61.0
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 2.4e-42 176.8 129 65.9
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 5.7e-36 155.6 217 44.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 3.1e-34 149.8 118 55.9
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 5.9e-33 145.6 236 36.4
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 6.8e-29 132.1 146 50.0
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 7.0e-26 122.1 175 41.1
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 7.2e-23 112.1 73 68.5
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 4.0e-21 106.3 103 55.3
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.8e-18 97.4 82 58.5
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 6.6e-16 89.0 52 76.9
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 3.6e-14 83.2 48 72.9
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.1e-13 80.1 47 78.7
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 2.0e-12 77.4 50 70.0
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.7e-11 73.2 59 57.6
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 4.1e-10 69.7 168 31.5
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.7e-09 67.0 50 62.0
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 7.8e-09 65.5 166 31.3
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 3.0e-08 63.5 176 29.5
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.0e-08 63.5 51 56.9
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.3e-07 59.7 164 29.3
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 4.3e-07 59.7 165 30.3
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 7.3e-07 58.9 104 35.6
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 9.5e-07 58.5 29 86.2
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.6e-06 57.8 50 48.0


User provided reference genes

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