Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 2468.3 1222 100.0
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1448.0 1217 59.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1352.0 1207 55.6
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1309.7 1211 53.2
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1273.8 1210 53.9
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1272.3 1210 53.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1268.1 1206 52.7
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1264.2 1211 53.1
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1255.4 1194 52.5
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1250.0 1210 52.6
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1244.2 1194 52.3
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1237.6 1205 51.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1236.1 1215 52.2
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1233.8 1215 51.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1232.2 1206 51.1
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1230.3 1210 50.9
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1230.3 1215 50.9
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1229.9 1202 52.4
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1228.8 1210 51.0
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1221.1 1218 50.8
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1220.7 1198 52.1
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1219.5 1214 51.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1218.4 1218 50.8
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1218.0 1218 50.4
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1216.1 1218 50.7
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1213.7 1215 51.1
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1208.0 1193 51.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1207.2 1199 50.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1205.7 1210 51.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1204.5 1209 50.6
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1203.7 1209 50.3
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1203.3 1215 50.1
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1203.0 1209 50.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1202.6 1214 50.9
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1198.3 1201 50.7
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1196.0 1216 50.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1195.6 1220 50.3
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1195.6 1212 50.4
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1194.9 1211 49.6
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1192.2 1217 50.5
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1189.1 1223 50.0
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1188.3 1210 50.0
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1186.8 1195 50.9
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1186.0 1220 49.9
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1185.2 1186 50.8
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1184.1 1213 50.5
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1183.7 1210 50.3
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1182.5 1210 50.2
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1182.2 1210 50.7
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1181.0 1210 50.7
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1179.5 1219 49.5
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1179.1 1202 50.4
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1178.3 1251 48.6
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1177.2 1251 48.8
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1177.2 1212 50.2
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1175.2 1252 48.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1174.5 1222 49.7
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1172.9 1218 48.9
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1172.5 1204 49.5
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1172.5 1220 49.0
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1171.8 1231 49.3
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1171.8 1219 48.8
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1168.7 1221 49.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1163.7 1212 49.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1163.3 1207 49.2
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1162.9 1209 49.7
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1161.7 1201 49.4
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1161.4 1172 49.8
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1158.7 1264 48.4
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1155.6 1214 49.4
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1154.0 1208 48.3
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1151.0 1220 47.5
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1145.2 1210 49.8
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1143.6 1210 48.5
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1143.3 1217 47.9
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1142.5 1156 50.0
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1141.7 1210 48.7
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1138.3 1278 47.0
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1137.5 1218 48.5
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1137.1 1206 48.8
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1134.8 1225 48.6
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1133.2 1210 48.2
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1132.9 1211 48.1
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1132.5 1223 47.9
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1132.5 1215 48.1
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1130.9 1202 48.0
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1130.5 1210 48.4
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1130.5 1210 47.6
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1130.5 1210 47.9
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1127.5 1210 46.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1126.3 1324 45.1
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1124.0 1170 49.8
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1122.8 1234 47.2
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1107.8 1252 47.2
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1089.7 1293 46.6
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1085.9 1210 46.9
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1082.0 1040 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 0.0e+00 1080.1 1131 50.5
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 9.4e-306 1053.9 1030 51.8
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 3.2e-277 959.1 986 49.2
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 2.7e-276 956.1 1001 49.7
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 1.0e-275 954.1 1215 44.3
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 2.2e-262 909.8 1108 45.2
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 2.9e-254 882.9 1239 41.1
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 5.1e-251 872.1 1216 42.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 1.2e-244 850.9 1209 40.3
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.3e-242 842.4 857 49.7
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 6.9e-240 835.1 1227 39.7
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.5e-210 737.6 792 47.7
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.8e-201 706.1 878 44.0
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 8.8e-187 658.7 727 47.0
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 6.3e-185 652.5 727 46.5
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 6.4e-169 599.4 594 51.9
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.4e-163 581.6 727 44.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 5.4e-160 569.7 491 56.4
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.1e-157 562.0 850 38.5
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.7e-145 521.5 498 52.8
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.2e-144 517.3 564 49.6
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.9e-129 467.6 766 36.9
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 4.5e-114 417.2 413 52.5
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.2e-105 388.3 394 51.0
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.6e-77 295.0 591 34.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 9.2e-67 260.0 262 49.2
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 3.7e-52 211.5 384 33.6
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.3e-46 192.2 276 38.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 2.7e-42 178.7 311 33.8
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.8e-37 161.0 319 31.3
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 5.4e-35 154.5 177 44.1
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 2.3e-33 149.1 138 53.6
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 6.6e-33 147.5 191 42.9
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.4e-19 102.4 133 36.8
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.5e-16 93.2 150 41.3
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 3.3e-16 92.0 73 54.8
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.7e-10 72.4 313 22.0
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 4.6e-10 71.6 87 39.1
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.0e-09 70.5 134 30.6
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 4.0e-06 58.5 209 27.3


User provided reference genes

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