Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 0.0e+00 1621.3 1147 100.0
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.1e-105 386.7 878 46.6
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.7e-104 383.3 918 45.4
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 3.8e-99 367.5 538 50.0
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 8.8e-96 356.3 513 51.9
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 9.7e-95 352.8 526 50.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.7e-94 350.9 513 49.9
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 8.3e-94 349.7 593 50.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.1e-93 349.4 534 47.2
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.8e-93 348.6 542 48.3
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.1e-93 347.4 516 50.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.6e-92 345.5 514 50.2
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 2.7e-92 344.7 542 48.5
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 5.9e-92 343.6 513 49.1
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 3.8e-91 340.9 497 48.3
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 3.8e-91 340.9 500 49.2
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 5.0e-91 340.5 538 45.2
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 6.5e-91 340.1 532 47.0
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 8.5e-91 339.7 524 48.7
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.5e-90 339.0 538 45.0
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.5e-90 339.0 538 45.0
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.5e-90 339.0 518 49.0
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.5e-90 339.0 505 48.9
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.9e-90 338.6 538 45.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.5e-90 338.2 537 48.8
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 3.2e-90 337.8 538 45.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 5.5e-90 337.0 497 48.1
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-89 335.1 492 47.0
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 4.7e-89 334.0 501 50.9
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 6.1e-89 333.6 495 47.9
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.0e-88 332.8 539 44.7
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.0e-88 332.8 512 46.1
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.4e-88 332.4 537 46.7
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 3.0e-88 331.3 534 47.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 3.0e-88 331.3 503 47.9
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 3.0e-88 331.3 507 47.7
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 4.0e-88 330.9 547 48.1
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 5.2e-88 330.5 596 47.3
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 6.8e-88 330.1 503 48.9
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 8.8e-88 329.7 548 47.3
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 8.8e-88 329.7 491 47.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 2.0e-87 328.6 497 46.1
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.0e-87 328.6 512 48.2
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.6e-87 328.2 516 48.6
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.6e-87 328.2 512 45.9
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 5.7e-87 327.0 500 48.6
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.7e-86 325.5 607 46.0
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.7e-86 325.5 606 45.0
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.2e-86 325.1 508 43.3
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.8e-86 323.9 501 49.1
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 4.8e-86 323.9 500 46.6
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 6.3e-86 323.6 515 47.6
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 8.3e-86 323.2 505 48.5
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 8.3e-86 323.2 502 46.8
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.1e-85 322.8 619 44.4
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.1e-85 322.8 609 44.2
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 7.0e-85 320.1 507 45.2
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 9.1e-85 319.7 502 47.2
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 9.1e-85 319.7 502 45.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.7e-84 318.2 499 46.1
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 5.9e-84 317.0 513 46.2
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 5.9e-84 317.0 501 48.5
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.9e-84 317.0 501 48.5
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.9e-84 317.0 501 48.5
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.0e-83 316.2 501 48.7
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 2.3e-83 315.1 494 47.4
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 6.6e-83 313.5 502 47.0
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 6.6e-83 313.5 538 46.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 8.6e-83 313.2 501 46.1
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 3.3e-82 311.2 511 46.4
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 5.5e-82 310.5 494 47.4
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.6e-81 308.9 539 47.1
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.1e-81 308.5 502 47.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 2.8e-81 308.1 516 46.3
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.8e-81 308.1 494 47.2
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.0e-80 306.2 493 45.4
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.8e-80 305.4 520 46.2
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.0e-79 302.0 502 46.8
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.4e-79 301.2 502 46.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 3.4e-79 301.2 498 49.2
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 9.8e-79 299.7 538 44.1
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 9.8e-79 299.7 532 44.5
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.2e-78 298.5 537 44.9
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.2e-78 298.5 507 47.1
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.8e-78 298.1 498 48.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 8.3e-78 296.6 511 46.0
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.4e-77 295.8 501 45.5
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 3.2e-77 294.7 492 45.3
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.6e-76 292.4 512 44.5
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.7e-75 288.9 637 40.5
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.9e-75 287.7 426 44.8
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.1e-74 286.2 512 44.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.2e-73 282.7 530 46.0
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 6.1e-73 280.4 535 46.5
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.0e-72 279.6 545 43.1
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 4.0e-72 277.7 508 44.3
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 6.8e-72 276.9 508 41.5
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.2e-71 276.2 474 45.4
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 2.0e-71 275.4 513 44.2
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 9.2e-69 266.5 511 42.1
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 2.7e-68 265.0 605 43.0
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 2.7e-68 265.0 606 43.2
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 7.8e-68 263.5 252 60.3
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 4.3e-58 231.1 488 45.5
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.3e-56 225.3 407 45.9
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.4e-55 221.5 512 38.1
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.4e-53 216.1 177 63.8
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 9.2e-53 213.4 511 38.7
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 8.9e-48 196.8 554 37.5
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.5e-47 196.1 299 44.5
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.4e-45 188.7 306 42.8
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.9e-42 179.1 178 55.1
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 3.9e-35 154.8 398 36.2
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 7.3e-34 150.6 234 55.1
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.8e-33 147.9 223 43.9
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 2.6e-31 142.1 229 47.2
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 4.6e-28 131.3 222 48.2
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.0e-27 128.6 216 51.9
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 3.0e-27 128.6 223 52.9
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.3e-26 124.8 269 45.4
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.5e-23 114.8 374 29.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 3.8e-22 111.7 265 40.8
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.1e-17 95.9 94 57.4
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-16 92.0 65 64.6
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 3.1e-16 92.0 343 33.5
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.3e-16 91.3 142 47.2
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 6.9e-16 90.9 63 65.1
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 8.4e-14 84.0 97 49.5
Pp3s450_10 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.2e-12 80.1 93 55.9
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.7e-12 79.0 97 48.5
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 4.6e-12 78.2 71 53.5
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 3.0e-11 75.5 78 56.4
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 2.8e-09 68.9 66 51.5
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 7.7e-07 60.8 682 32.6
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.0e-06 60.5 96 67.7
ATR0684G236 Amborella trichopoda HOM05D000142 ORTHO05D003173 6.5e-06 57.8 79 46.8
Glyma.09G205500 Glycine max HOM05D000142 ORTHO05D003173 8.5e-06 57.4 99 37.4
Sed0006524 Sechium edule HOM05D000142 ORTHO05D003173 8.5e-06 57.4 92 37.0


User provided reference genes

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