Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 0.0e+00 1095.5 638 100.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 5.1e-186 655.2 643 60.5
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 6.7e-170 601.7 650 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 4.1e-167 592.4 642 56.2
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.8e-165 585.9 653 55.1
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 7.5e-137 491.9 659 47.3
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.2e-134 484.6 621 49.3
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-134 483.4 677 47.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-134 483.4 673 47.4
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 5.9e-134 482.3 619 47.3
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 3.8e-133 479.6 677 47.3
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-132 477.6 674 47.0
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 9.5e-132 474.9 678 46.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.2e-131 474.6 683 46.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.6e-131 474.2 677 48.4
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.6e-131 473.0 618 48.2
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 4.7e-131 472.6 677 46.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 6.1e-131 472.2 674 50.6
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.1e-131 472.2 674 46.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.4e-130 471.1 615 48.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.4e-130 471.1 674 45.5
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.0e-130 469.5 678 46.5
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 8.9e-130 468.4 675 50.2
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.2e-129 468.0 620 46.0
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.2e-129 468.0 672 46.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 9.8e-129 464.9 609 48.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 9.8e-129 464.9 675 46.7
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.7e-128 464.2 677 47.6
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.7e-128 464.2 609 48.4
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.2e-128 463.8 666 48.6
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.7e-128 463.0 609 48.4
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 6.3e-128 462.2 606 46.4
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 6.3e-128 462.2 679 47.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 6.3e-128 462.2 613 47.1
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 6.3e-128 462.2 615 47.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 6.3e-128 462.2 615 47.6
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.4e-127 461.1 681 48.6
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.4e-127 461.1 687 42.9
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.4e-127 460.3 663 45.6
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.1e-127 459.9 623 48.6
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 4.1e-127 459.5 623 48.8
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 5.4e-127 459.1 676 45.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.7e-126 456.8 611 48.1
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.5e-126 456.1 676 46.0
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 7.8e-126 455.3 667 47.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.3e-125 453.8 678 46.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.9e-125 453.4 678 46.8
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 5.0e-125 452.6 677 46.7
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.6e-125 452.2 621 47.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 8.6e-125 451.8 689 46.6
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.5e-124 450.3 620 47.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.5e-124 450.3 675 44.9
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.3e-124 449.9 686 45.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 3.3e-124 449.9 671 45.9
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 7.3e-124 448.7 682 43.7
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-123 448.0 659 46.1
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.8e-123 446.8 675 45.8
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.6e-123 446.4 674 44.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 6.1e-123 445.7 662 44.7
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 2.3e-122 443.7 685 47.6
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.1e-122 443.4 613 47.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 3.1e-122 443.4 685 47.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.5e-121 441.0 612 45.9
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.5e-121 441.0 696 46.8
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.0e-121 440.7 607 46.6
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.4e-121 439.5 676 44.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 5.8e-121 439.1 606 46.4
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 5.8e-121 439.1 677 45.3
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-120 437.2 607 46.5
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-120 436.8 607 46.3
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 3.7e-120 436.4 613 44.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.7e-120 436.4 622 45.7
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 3.7e-120 436.4 617 45.2
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.9e-120 436.0 667 42.3
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 6.4e-120 435.6 681 48.5
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.1e-119 434.9 667 43.5
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.9e-119 434.1 621 46.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.2e-119 433.3 613 44.2
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.1e-119 433.0 669 43.9
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-118 431.4 622 45.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.0e-118 430.6 590 45.6
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.6e-118 429.5 679 47.9
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.0e-117 428.3 663 43.4
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.0e-117 428.3 681 43.5
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-117 427.9 666 43.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.3e-117 427.9 586 44.0
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.3e-117 427.9 664 43.5
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.3e-117 427.2 672 47.2
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.0e-117 426.8 654 45.0
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 3.0e-117 426.8 608 45.7
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 3.9e-117 426.4 601 45.1
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 6.6e-117 425.6 662 43.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.3e-116 423.3 603 44.4
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 4.3e-116 422.9 661 43.4
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 9.5e-116 421.8 595 46.4
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.1e-115 420.6 667 43.3
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.8e-115 420.2 610 45.4
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.8e-115 420.2 610 45.4
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 4.7e-115 419.5 655 44.0
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.1e-114 418.3 615 46.3
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-114 417.9 676 42.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.8e-114 417.5 684 45.8
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 2.3e-114 417.2 596 46.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.3e-114 417.2 671 42.5
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.0e-114 416.4 682 41.1
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 5.2e-114 416.0 592 44.8
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 8.9e-114 415.2 652 42.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.2e-113 414.8 539 51.2
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.5e-113 414.5 586 46.2
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.5e-113 414.5 598 46.2
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.0e-113 414.1 672 44.2
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 5.8e-113 412.5 550 46.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 7.5e-113 412.1 670 42.2
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 7.5e-113 412.1 600 46.0
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.8e-113 411.8 595 43.5
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.3e-112 411.4 699 41.1
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.5e-110 403.3 613 45.7
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 6.0e-110 402.5 667 40.2
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-109 401.0 548 45.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-109 401.0 548 45.6
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.7e-109 401.0 545 47.3
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.1e-109 399.4 666 42.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 8.6e-109 398.7 610 42.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 4.3e-108 396.4 675 40.1
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 8.1e-107 392.1 698 40.7
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.0e-106 389.8 663 41.3
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.4e-105 386.7 701 41.5
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.4e-105 386.7 563 44.8
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 4.9e-104 382.9 600 43.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 8.3e-104 382.1 652 41.3
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.9e-103 380.9 613 43.7
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 9.2e-103 378.6 662 40.3
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-102 378.3 678 39.7
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.7e-102 377.1 605 42.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.6e-102 376.3 673 39.4
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-100 371.7 673 40.3
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.1e-100 371.7 617 40.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.1e-99 367.5 679 39.3
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.6e-99 366.7 536 44.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.4e-98 364.8 675 39.3
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 8.9e-98 362.1 534 43.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.2e-97 361.7 611 45.2
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 9.9e-97 358.6 682 38.0
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.3e-96 358.2 607 44.0
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-96 357.8 646 42.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.9e-96 357.1 573 41.2
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.9e-96 357.1 570 43.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 5.4e-95 352.8 602 41.0
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.1e-94 350.9 513 44.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 3.1e-90 337.0 576 41.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 2.0e-89 334.3 660 39.8
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.4e-87 327.4 668 36.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 7.6e-73 279.3 627 39.9
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.4e-63 248.4 412 43.4
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 4.2e-63 246.9 424 41.5
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 8.7e-61 239.2 353 44.8
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.5e-57 226.9 418 41.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.5e-52 211.8 596 31.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.5e-52 211.1 407 36.9
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.6e-49 201.1 267 44.6
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 5.1e-45 186.8 217 51.2
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.1e-42 179.1 320 40.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.1e-39 169.1 255 40.0
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 9.7e-36 156.0 571 30.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.0e-21 109.4 109 50.5
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.5e-17 94.4 75 64.0
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.0e-16 92.8 106 46.2
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 9.5e-15 86.3 66 59.1
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.4e-13 82.4 382 24.9
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.8e-13 82.0 150 38.7
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 6.8e-13 80.1 134 36.6
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-11 75.5 226 34.1
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.8e-10 72.0 48 68.8
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.0e-08 66.2 470 26.2
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.5e-07 61.6 53 50.9
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.5e-07 61.6 57 47.4


User provided reference genes

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