Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1486.5 725 100.0
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1307.0 723 87.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1206.8 717 80.8
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1193.7 731 79.3
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1180.2 719 79.8
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1177.5 719 79.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1139.0 718 76.3
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1113.2 718 75.3
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1111.7 756 72.5
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1102.0 718 76.2
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1098.6 713 73.6
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1097.8 717 74.9
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1090.5 718 74.1
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1089.7 718 74.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1089.3 718 74.0
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 0.0e+00 1086.2 717 73.6
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 0.0e+00 1080.9 723 73.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 5.0e-312 1073.5 713 73.2
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 7.4e-311 1070.1 719 71.6
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 3.8e-310 1067.8 717 71.8
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 8.3e-310 1066.6 720 71.7
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-309 1066.2 701 74.6
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 1.4e-309 1065.8 723 72.8
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 9.2e-309 1063.1 721 71.8
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.5e-308 1061.2 718 73.5
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 3.0e-307 1058.1 723 71.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 3.6e-305 1051.2 714 71.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 2.6e-303 1045.0 713 71.1
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 4.4e-303 1044.3 714 71.4
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.1e-301 1039.6 698 71.8
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 4.2e-301 1037.7 719 70.7
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 7.1e-301 1036.9 716 71.2
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 5.1e-299 1030.8 734 69.8
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.6e-297 1025.8 741 68.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.4e-293 1012.7 714 69.9
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 9.3e-293 1010.0 729 69.7
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 6.0e-292 1007.3 741 66.8
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.8e-291 1005.7 749 66.6
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 3.0e-291 1005.0 716 69.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.0e-291 1005.0 742 66.8
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.9e-291 1004.6 716 68.6
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.5e-290 1002.7 742 67.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.5e-290 1002.7 717 68.9
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 3.3e-290 1001.5 720 68.9
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 4.8e-289 997.7 715 67.8
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 8.1e-289 996.9 730 68.1
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 8.1e-289 996.9 718 67.8
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.1e-288 996.5 742 66.6
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.4e-288 995.3 717 67.6
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.7e-286 989.2 718 67.1
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-285 986.5 716 67.7
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-285 986.5 718 67.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 9.3e-285 983.4 719 66.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.3e-283 979.5 718 66.6
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.9e-283 978.0 713 66.5
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.7e-283 977.2 742 65.8
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.3e-282 974.9 715 66.6
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.8e-281 971.8 729 67.1
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.7e-281 971.5 758 64.4
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 6.2e-281 970.7 729 66.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.4e-280 969.5 729 66.8
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.8e-280 969.1 729 66.8
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 9.0e-280 966.8 770 63.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.6e-279 965.3 729 66.4
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.4e-279 964.9 713 65.8
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 1.1e-277 959.9 711 67.1
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.2e-277 958.0 724 65.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 7.1e-277 957.2 711 66.4
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.6e-276 956.1 722 65.2
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.6e-276 956.1 723 65.6
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.6e-276 956.1 774 63.3
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.3e-275 953.0 693 67.8
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 1.8e-275 952.6 713 65.1
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 6.7e-275 950.7 723 65.0
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.1e-274 949.9 724 65.3
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 5.7e-274 947.6 716 64.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.8e-273 945.3 718 65.6
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 4.8e-273 944.5 718 65.5
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.4e-272 943.0 729 66.1
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 3.1e-272 941.8 718 65.3
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 4.1e-272 941.4 663 70.3
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 5.3e-272 941.0 723 64.7
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 9.0e-272 940.3 713 65.1
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.2e-271 939.9 713 66.3
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.6e-271 938.7 718 65.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 5.9e-271 937.6 722 63.7
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.0e-270 936.8 723 65.0
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.4e-269 932.9 713 64.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.2e-268 929.9 726 63.6
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.7e-268 928.7 718 64.9
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 6.1e-268 927.5 726 63.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 7.9e-268 927.2 723 64.2
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 7.9e-268 927.2 723 64.2
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.0e-267 925.2 717 64.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 6.7e-267 924.1 719 67.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 2.5e-266 922.2 723 63.9
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 4.3e-266 921.4 714 65.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 5.7e-266 921.0 723 63.9
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 9.7e-266 920.2 715 64.2
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 9.7e-266 920.2 716 63.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 4.8e-265 917.9 715 63.4
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 6.3e-265 917.5 723 63.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.5e-263 911.4 716 63.3
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 2.2e-262 909.1 715 63.2
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.2e-262 909.1 717 62.8
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.9e-261 906.0 763 61.5
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 2.5e-261 905.6 717 63.3
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 2.5e-261 905.6 736 62.0
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 2.5e-261 905.6 721 62.7
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.5e-261 905.6 725 62.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.2e-261 905.2 716 63.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 5.5e-261 904.4 716 62.7
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 9.4e-261 903.7 729 63.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 6.1e-260 901.0 720 63.5
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 6.1e-260 901.0 716 62.7
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.3e-257 893.3 719 63.7
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.3e-257 893.3 717 63.2
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 2.6e-255 885.6 716 63.3
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.4e-255 885.2 735 61.5
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 5.9e-255 884.4 715 62.1
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.3e-254 883.2 721 62.3
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.2e-254 882.5 742 61.1
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 6.5e-254 880.9 715 62.0
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.9e-253 879.4 715 61.4
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.5e-253 879.0 716 61.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-252 876.7 715 61.3
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.3e-250 868.6 619 69.1
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.7e-249 866.3 730 60.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.8e-248 862.8 715 60.6
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.2e-244 850.1 718 59.1
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.3e-240 834.7 717 57.6
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.6e-239 833.2 713 59.2
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.0e-238 828.2 520 75.8
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.2e-237 825.5 719 58.3
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 2.0e-234 816.2 722 57.3
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 2.6e-234 815.8 713 57.6
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 4.8e-233 811.6 698 60.0
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.0e-230 803.9 726 58.0
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.2e-228 797.0 718 57.7
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.5e-226 790.0 706 58.6
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 2.2e-225 786.2 724 57.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 6.6e-222 774.6 717 55.2
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 5.1e-198 695.3 592 61.8
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.4e-192 675.2 713 51.8
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.2e-162 577.8 797 41.7
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.3e-149 533.1 757 40.0
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.9e-146 522.3 800 39.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.9e-144 517.3 403 64.3
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 3.2e-144 516.5 317 77.3
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-139 501.5 809 38.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 4.2e-136 489.6 456 57.9
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 7.7e-130 468.8 803 37.1
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 2.8e-124 450.3 318 71.7
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.6e-122 444.5 294 74.8
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.5e-120 438.0 633 41.2
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.8e-95 354.0 259 67.6
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.7e-90 337.4 402 46.0
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.6e-88 329.7 316 54.4
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 7.3e-72 276.2 157 84.1
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.8e-71 273.5 558 33.9
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 9.6e-64 249.2 260 55.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.2e-58 232.3 144 73.6
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 3.5e-58 230.7 834 27.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 2.5e-51 208.0 157 64.3
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 5.1e-49 200.3 210 53.8
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.7e-49 199.9 119 79.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.2e-47 193.4 199 53.8
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 3.1e-46 191.0 115 75.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 5.3e-46 190.3 204 52.5
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 6.9e-38 163.3 541 28.1
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.5e-37 162.2 111 71.2
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.6e-34 152.1 440 28.2
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 3.6e-34 151.0 99 74.7
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.1e-33 147.1 99 72.7
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.0e-32 145.2 657 24.5
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.1e-22 110.9 87 64.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 7.7e-21 106.7 95 60.0
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 3.7e-15 87.8 164 33.5
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 2.7e-10 71.6 106 39.6
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 4.4e-08 64.3 41 68.3


User provided reference genes

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