Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 5.5e-113 411.0 208 100.0
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 2.0e-83 312.8 194 84.0
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.0e-82 310.5 193 82.9
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.0e-79 300.4 193 81.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.3e-79 299.3 195 80.5
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.4e-78 295.0 196 80.1
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 9.7e-78 293.9 194 80.4
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 3.7e-77 292.0 195 80.0
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 6.3e-77 291.2 198 78.8
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.1e-76 290.4 197 79.7
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.0e-76 287.7 193 78.8
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.1e-76 287.3 197 79.2
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 9.1e-76 287.3 197 79.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.6e-75 286.6 194 76.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.7e-75 285.8 194 77.8
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.7e-75 285.8 193 78.2
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.7e-75 285.8 197 77.2
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 5.9e-75 284.6 194 77.8
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.3e-74 283.5 187 80.2
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.9e-74 282.3 194 77.8
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 3.8e-74 282.0 203 74.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 3.8e-74 282.0 193 76.7
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 3.8e-74 282.0 188 79.3
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 8.5e-74 280.8 203 74.4
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 8.5e-74 280.8 194 76.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-73 280.4 195 76.4
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-73 280.4 195 76.4
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.5e-73 280.0 195 76.4
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.9e-73 279.6 193 78.8
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.9e-73 279.6 196 76.5
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.5e-73 279.3 194 79.4
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 7.2e-73 277.7 196 76.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 7.2e-73 277.7 193 76.2
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.6e-72 276.6 193 76.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.1e-72 276.2 197 76.6
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 2.7e-72 275.8 198 77.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 2.7e-72 275.8 198 77.3
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.7e-72 275.0 194 76.3
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 6.1e-72 274.6 198 77.3
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.8e-71 273.1 195 75.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 3.0e-71 272.3 193 77.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.0e-71 272.3 198 75.3
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 8.8e-71 270.8 193 77.7
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.5e-70 270.0 193 74.6
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.5e-70 270.0 199 74.4
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.4e-70 268.9 193 77.2
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.2e-69 266.2 196 72.4
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 8.3e-69 264.2 194 73.7
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.8e-68 263.1 201 75.1
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.4e-68 262.7 197 74.1
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 7.0e-68 261.2 194 74.2
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 7.0e-68 261.2 194 71.6
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 9.1e-68 260.8 194 75.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 9.1e-68 260.8 195 74.4
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.6e-67 260.0 194 73.7
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.6e-67 260.0 193 74.1
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.5e-67 258.8 197 73.6
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 7.7e-67 257.7 203 74.4
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 7.7e-67 257.7 193 73.1
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.0e-66 257.3 195 73.8
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 5.0e-66 255.0 203 73.4
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 6.6e-66 254.6 195 72.3
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 8.6e-66 254.2 194 73.7
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.1e-65 253.8 193 73.6
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.9e-65 253.1 195 70.3
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 4.2e-65 251.9 194 70.1
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 4.2e-65 251.9 194 73.7
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 7.2e-65 251.1 203 72.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 9.5e-65 250.8 175 80.0
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.1e-64 249.6 201 71.1
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.1e-64 249.6 193 68.4
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 2.8e-64 249.2 192 73.4
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 3.6e-64 248.8 192 72.4
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 6.1e-64 248.1 181 76.2
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 8.0e-64 247.7 192 71.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.0e-63 247.3 192 71.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.0e-63 247.3 192 71.4
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.4e-63 246.9 192 71.4
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-63 246.9 192 71.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.4e-63 246.9 192 71.4
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 3.0e-63 245.7 201 71.6
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 3.0e-63 245.7 195 70.8
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 3.0e-63 245.7 196 70.9
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 3.0e-63 245.7 194 70.1
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 5.2e-63 245.0 192 71.4
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 6.8e-63 244.6 192 70.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 6.8e-63 244.6 192 70.8
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 6.8e-63 244.6 197 69.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.5e-62 243.4 194 68.6
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 5.7e-62 241.5 195 71.8
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 7.5e-62 241.1 153 81.7
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 9.8e-62 240.7 192 70.8
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 9.8e-62 240.7 192 70.8
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 9.8e-62 240.7 192 70.8
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 9.8e-62 240.7 192 70.8
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 9.8e-62 240.7 192 70.8
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.7e-61 240.0 195 67.7
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.2e-61 239.6 150 82.7
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.2e-61 239.6 150 82.7
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 2.8e-61 239.2 192 70.8
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.8e-61 239.2 175 74.9
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 3.7e-61 238.8 192 69.3
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 6.3e-61 238.0 198 69.2
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.4e-60 236.9 187 70.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.8e-60 236.5 194 69.1
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 7.0e-60 234.6 196 68.9
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.2e-59 233.8 195 65.6
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 7.8e-59 231.1 197 69.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.7e-58 229.9 196 69.4
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.8e-58 228.8 198 66.2
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 6.6e-58 228.0 195 67.2
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.5e-57 226.1 169 74.6
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 9.5e-57 224.2 158 79.1
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.1e-56 223.0 180 72.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.7e-56 221.9 201 64.7
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 6.1e-56 221.5 201 65.7
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.2e-54 217.2 118 90.7
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.6e-54 216.1 192 64.1
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 7.5e-54 214.5 151 79.5
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 4.9e-53 211.8 141 80.9
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.5e-49 200.3 113 89.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 9.8e-46 187.6 200 57.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 3.7e-45 185.7 147 67.3
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 6.4e-45 184.9 120 78.3
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.1e-44 184.1 206 55.3
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-43 179.9 117 77.8
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.7e-43 179.5 154 63.6
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.0e-42 177.6 154 68.2
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 3.2e-36 156.0 84 92.9
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.6e-35 153.7 89 86.5
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 4.6e-35 152.1 82 92.7
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.5e-30 137.1 163 50.9
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 3.3e-25 119.4 112 58.9
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.6e-24 115.9 82 70.7
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.4e-22 109.0 81 76.5
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.3e-21 107.5 81 66.7
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.8e-15 87.0 77 58.4
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.8e-15 87.0 77 58.4
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.9e-12 77.0 43 83.7
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.6e-09 65.5 38 78.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.8e-08 63.2 38 78.9
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 1.1e-07 61.2 60 50.0
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 4.5e-06 55.8 103 35.9
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 7.6e-06 55.1 103 35.9


User provided reference genes

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