Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 2384.8 1188 100.0
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1728.8 1188 71.0
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1681.0 1228 68.0
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1634.4 1176 68.5
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1629.8 1187 67.6
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1620.9 1187 67.6
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1616.7 1184 67.2
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1614.4 1179 67.5
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1612.8 1188 67.2
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1597.4 1402 58.6
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1564.7 1186 66.5
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1562.4 1197 65.2
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1562.4 1183 65.2
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1560.8 1181 65.5
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1550.4 1132 68.6
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1539.6 1184 64.6
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1518.8 1184 63.6
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1517.3 1197 63.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1515.7 1187 62.0
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1510.4 1182 62.9
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1507.7 1182 62.9
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1504.6 1181 63.8
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1493.4 1186 62.0
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1492.2 1194 62.2
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1488.0 1192 62.8
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1484.2 1172 64.0
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1483.4 1182 62.0
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1468.8 1187 61.2
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1464.1 1181 62.2
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1463.4 1188 60.5
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1463.0 1187 60.3
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1461.8 1172 61.3
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1458.0 1188 60.4
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1456.8 1172 60.9
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1454.9 1182 61.0
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1448.7 1170 60.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1448.0 1183 59.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1440.2 1191 60.5
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1431.0 1174 60.6
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1430.2 1173 60.6
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1430.2 1174 60.5
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1429.1 1176 59.9
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1425.2 1187 59.1
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1421.4 1170 59.7
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1410.6 1173 60.0
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1409.4 1172 60.1
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1409.0 1036 66.6
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1405.2 1171 59.5
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1404.8 1173 59.3
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1402.9 1181 59.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1402.9 1392 54.2
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1399.8 1174 59.0
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1390.6 1218 57.3
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1388.2 1171 58.8
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1369.0 1172 58.4
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1368.6 1175 57.8
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1368.6 1181 58.6
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1364.4 1182 57.0
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1361.7 1181 58.3
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1359.7 1172 58.0
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1353.2 1179 58.2
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1343.2 1182 57.3
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1343.2 1226 56.7
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1339.3 1185 57.6
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1338.2 1183 57.1
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1337.0 1182 57.8
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1327.8 1187 57.8
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1327.8 1055 61.6
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1325.8 1183 57.0
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1320.1 1181 55.9
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1315.8 1171 57.0
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1310.0 1179 56.2
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1301.2 1171 55.6
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1290.8 1059 60.2
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1271.5 1137 57.0
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1257.3 1180 54.6
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1226.1 1176 53.7
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1181.0 1185 51.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 1171.0 1113 54.1
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1149.4 1110 54.1
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1146.7 1216 50.5
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1119.0 1197 48.5
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1117.4 1177 49.4
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1113.2 1124 51.8
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1083.6 1162 49.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 4.7e-310 1068.1 1169 48.1
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.3e-296 1022.7 841 61.8
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.6e-287 991.5 757 65.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.9e-267 925.2 715 64.3
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 6.1e-249 865.1 782 56.6
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 7.9e-241 838.2 1110 43.3
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 8.5e-235 818.1 764 54.8
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.3e-203 713.8 1200 35.8
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.8e-200 704.1 586 59.2
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.6e-172 611.3 1190 33.9
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 4.0e-168 596.7 441 67.8
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.3e-163 580.9 466 60.3
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.3e-158 565.1 614 49.2
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.6e-140 505.0 1124 32.7
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 2.5e-133 481.1 390 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 4.2e-133 480.3 833 36.5
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.5e-117 426.8 437 53.1
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.7e-108 397.1 531 40.5
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 7.7e-103 379.8 292 64.4
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.3e-99 368.2 421 43.9
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.3e-86 325.1 217 72.8
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.6e-76 292.4 204 68.1
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 5.4e-72 277.3 185 70.3
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-63 248.8 1129 26.0
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 3.6e-60 238.0 176 67.6
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.8e-58 230.7 252 48.4
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 7.3e-53 213.8 208 53.4
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.9e-40 172.6 121 69.4
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 5.8e-34 151.0 150 52.0
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.3e-33 149.8 326 32.8
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.1e-21 110.2 877 22.1
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.5e-21 109.8 602 26.1
Cfa022114 Carpinus fangiana HOM05D005978 ORTHO05D007472 3.4e-18 98.6 898 21.6
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.3e-17 96.7 61 70.5
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 3.8e-17 95.1 107 50.5
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 7.2e-16 90.9 58 69.0
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 5.1e-14 84.7 53 69.8
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.9e-13 82.8 112 46.4
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 7.4e-13 80.9 79 53.2
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.4e-11 76.6 48 79.2
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 7.7e-10 70.9 51 72.5
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 1.7e-09 69.7 57 63.2
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.1e-08 67.0 46 65.2
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.9e-08 66.2 46 65.2


User provided reference genes

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