Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 0.0e+00 1199.1 609 100.0
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.1e-253 879.0 605 73.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.1e-253 879.0 605 73.4
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.7e-253 878.6 610 73.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.5e-251 872.8 601 73.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.8e-249 865.9 601 72.4
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 3.9e-244 848.2 606 72.4
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 4.1e-241 838.2 600 70.5
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 5.3e-241 837.8 599 70.6
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.1e-238 830.1 601 69.9
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.1e-238 830.1 598 70.2
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.2e-238 827.4 596 70.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.6e-237 826.2 605 70.9
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 4.6e-237 824.7 598 69.7
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.4e-236 823.2 607 70.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 3.0e-236 822.0 606 69.5
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 5.1e-236 821.2 594 69.9
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 6.7e-236 820.8 614 68.6
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.0e-235 819.3 600 69.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.5e-235 818.9 635 67.1
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 7.4e-235 817.4 622 67.4
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.3e-234 816.6 594 69.7
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 2.8e-234 815.5 606 69.1
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.1e-233 813.5 602 68.1
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.1e-233 813.5 601 68.6
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.5e-232 809.7 607 68.4
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.0e-232 809.3 597 68.5
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 3.4e-232 808.5 595 69.4
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.3e-231 806.6 632 67.1
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 6.5e-231 804.3 607 68.7
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 8.5e-231 803.9 596 69.1
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 8.5e-231 803.9 605 68.6
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.1e-230 803.5 604 67.5
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.5e-230 802.4 606 68.5
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 5.5e-230 801.2 606 68.5
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.2e-229 800.0 603 68.7
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.0e-228 797.0 606 68.2
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 8.8e-228 793.9 604 67.4
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.0e-227 792.7 601 67.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 3.3e-227 792.0 597 68.7
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 9.7e-227 790.4 603 67.2
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.2e-226 789.3 597 67.3
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.1e-225 786.9 605 67.8
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 1.4e-225 786.6 593 67.3
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.8e-225 786.2 597 67.2
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.4e-225 785.8 596 67.1
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.4e-225 785.8 598 67.4
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.0e-224 782.7 597 67.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.0e-224 782.7 600 66.7
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.9e-224 781.2 597 67.0
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 5.9e-224 781.2 599 67.3
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 3.8e-223 778.5 597 66.7
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 6.5e-223 777.7 610 65.2
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 7.2e-222 774.2 600 66.5
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.6e-221 773.1 595 66.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 2.1e-221 772.7 571 68.7
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.7e-221 772.3 610 64.8
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.0e-220 770.4 606 64.5
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-220 770.0 608 65.5
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.4e-220 770.0 602 66.1
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 4.4e-219 765.0 601 64.1
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.3e-218 763.5 607 64.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.1e-217 758.4 599 63.6
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 5.3e-217 758.1 607 63.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 5.3e-217 758.1 608 63.0
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 7.0e-217 757.7 610 64.9
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 9.1e-217 757.3 607 63.1
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.2e-216 756.9 607 63.6
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.0e-216 756.1 608 63.0
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 2.7e-216 755.7 604 63.9
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 3.5e-216 755.4 541 71.0
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 4.5e-216 755.0 604 63.7
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 5.9e-216 754.6 605 64.5
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.2e-215 752.7 604 64.4
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 6.5e-215 751.1 608 64.8
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.1e-214 750.4 601 63.6
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 4.2e-214 748.4 558 68.6
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 9.4e-214 747.3 612 64.4
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.6e-213 745.3 604 63.7
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 5.2e-212 741.5 608 63.5
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.2e-211 740.3 612 63.6
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.5e-211 740.0 617 61.9
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.0e-211 739.6 607 63.8
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.6e-211 739.2 604 63.7
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.3e-210 736.9 599 62.4
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 3.7e-210 735.3 617 61.6
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 4.5e-208 728.4 593 61.9
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 8.5e-207 724.2 603 60.7
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 6.1e-205 718.0 584 63.7
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.0e-204 717.2 608 60.9
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.5e-203 713.4 608 61.0
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.0e-203 713.0 596 60.4
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.0e-203 713.0 596 61.6
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.6e-203 712.6 595 60.2
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 2.6e-203 712.6 597 61.8
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 5.7e-203 711.4 604 62.6
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.7e-202 709.9 610 61.0
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-202 709.9 597 61.6
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.0e-201 704.5 610 61.5
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 9.2e-201 704.1 524 65.1
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.5e-200 701.8 603 61.9
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.5e-200 701.8 610 61.1
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.7e-199 699.9 610 61.0
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-199 699.9 610 61.0
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.5e-198 696.0 611 60.6
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.3e-198 694.5 610 60.8
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.6e-197 693.3 597 59.5
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.8e-197 692.6 619 58.5
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 2.3e-196 689.5 518 67.8
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.5e-195 686.8 601 61.1
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 4.3e-190 668.7 584 58.9
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.5e-187 660.2 600 57.7
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.7e-186 656.8 602 57.0
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.4e-185 652.9 602 59.6
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 3.9e-183 645.6 603 56.2
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.6e-181 640.2 596 58.4
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.5e-179 633.6 601 54.9
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.9e-177 626.7 607 55.2
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.1e-168 596.7 599 54.9
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.1e-164 582.8 596 52.9
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.4e-161 573.9 611 50.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.2e-161 572.8 466 63.7
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 2.3e-159 566.6 623 51.0
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 9.6e-150 534.6 442 61.5
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.4e-148 530.0 605 49.1
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.5e-134 484.2 392 65.1
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.4e-132 477.6 610 45.6
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.3e-119 433.7 318 66.4
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.9e-119 433.0 318 69.5
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.1e-118 431.4 626 40.6
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.0e-118 430.6 463 47.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 5.7e-118 429.1 519 47.6
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.0e-114 416.0 358 62.3
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.0e-110 404.1 613 41.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-101 374.8 353 58.1
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 5.4e-84 316.2 654 31.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 9.5e-81 305.4 266 59.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.6e-75 288.1 486 40.1
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.0e-70 271.2 198 67.2
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 6.4e-69 266.2 223 61.9
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.6e-64 251.5 182 69.8
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 6.6e-58 229.6 162 67.9
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.5e-57 228.4 136 75.0
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.8e-48 197.6 333 39.6
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 9.6e-41 172.6 120 70.8
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 4.2e-36 157.1 120 65.8
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.1e-35 154.8 115 67.8
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 7.9e-35 152.9 115 67.0
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 5.6e-33 146.7 135 55.6
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.6e-33 146.0 181 50.8
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.8e-31 141.7 99 72.7
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.3e-31 140.2 99 71.7
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 6.4e-29 133.3 80 75.0
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 3.9e-26 124.0 78 73.1
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 9.6e-25 119.4 180 44.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 4.0e-23 114.0 189 42.9
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.1e-20 105.9 82 65.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 7.9e-19 99.8 134 50.0
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 5.7e-17 93.6 105 53.3
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 7.4e-17 93.2 65 64.6
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 6.9e-15 86.7 56 66.1
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.2e-11 75.9 60 58.3
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 9.7e-09 66.2 49 59.2
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.4e-07 61.6 34 76.5
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.2e-06 59.3 36 77.8


User provided reference genes

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