Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.6e-241 839.0 402 100.0
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 2.1e-193 679.1 407 81.8
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 9.7e-191 670.2 365 88.2
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.6e-188 662.1 412 78.2
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 7.7e-188 660.6 402 80.6
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 6.5e-187 657.5 431 75.2
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.6e-185 651.4 396 80.8
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-183 646.7 401 78.1
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.0e-183 646.0 401 79.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 5.7e-183 644.4 396 79.0
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-183 644.0 402 77.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.3e-182 643.3 404 78.2
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.3e-182 643.3 340 87.6
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.3e-182 643.3 345 87.8
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.7e-182 642.9 393 79.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.7e-182 642.9 401 78.1
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.8e-182 642.1 340 87.9
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.8e-182 642.1 409 77.8
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.7e-182 641.7 395 79.7
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 4.8e-182 641.3 414 76.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 6.3e-182 641.0 405 77.8
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 8.2e-182 640.6 348 87.4
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 8.2e-182 640.6 396 79.3
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 8.2e-182 640.6 411 77.1
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 8.2e-182 640.6 357 84.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-181 640.2 401 77.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.1e-181 640.2 402 77.9
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-181 639.8 391 80.1
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 1.8e-181 639.4 401 78.1
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.4e-181 639.0 415 76.1
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.4e-181 639.0 415 77.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.1e-181 638.6 402 78.6
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.1e-181 638.3 350 84.9
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.2e-180 636.7 409 77.3
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.0e-180 636.0 351 85.8
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.0e-180 636.0 391 78.8
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.6e-180 635.6 344 85.5
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.6e-180 635.6 403 78.2
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.4e-180 635.2 405 77.5
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.5e-180 634.8 408 76.0
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.2e-179 632.5 373 80.7
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 2.9e-179 632.1 397 77.6
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 5.0e-179 631.3 344 85.2
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.5e-179 630.9 370 80.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 6.5e-179 630.9 401 76.6
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 8.5e-179 630.6 414 75.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.4e-178 629.8 370 80.0
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 7.2e-178 627.5 398 76.6
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 7.2e-178 627.5 374 79.7
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 9.4e-178 627.1 397 76.3
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 9.4e-178 627.1 394 76.6
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 9.4e-178 627.1 396 77.3
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 9.4e-178 627.1 374 79.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 9.4e-178 627.1 407 76.7
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 9.4e-178 627.1 379 78.9
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-177 626.3 373 79.6
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.6e-177 626.3 368 79.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 2.7e-177 625.5 400 75.5
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.7e-177 625.5 394 76.4
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 2.7e-177 625.5 400 75.5
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 3.6e-177 625.2 399 77.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 4.7e-177 624.8 405 74.6
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.0e-176 623.6 393 75.6
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.4e-176 623.2 405 75.3
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.3e-176 622.5 368 80.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.3e-176 622.5 335 86.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 3.0e-176 622.1 356 81.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.9e-176 621.7 396 74.5
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 6.7e-176 620.9 391 77.2
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 6.7e-176 620.9 348 83.3
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 8.8e-176 620.5 398 75.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 8.8e-176 620.5 356 81.7
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-175 620.2 368 79.9
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.6e-175 619.0 363 80.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 4.4e-175 618.2 472 66.9
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 5.7e-175 617.8 398 75.9
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 7.4e-175 617.5 385 77.9
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 7.4e-175 617.5 336 86.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 7.4e-175 617.5 357 80.7
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 9.7e-175 617.1 396 76.5
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 9.7e-175 617.1 367 80.1
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.3e-174 616.7 340 84.7
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.2e-174 615.9 407 74.9
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.8e-174 614.8 338 85.8
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 8.2e-174 614.0 345 82.9
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.1e-173 613.6 407 74.7
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.3e-173 611.3 345 81.7
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.0e-172 609.4 401 74.8
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 4.5e-172 608.2 399 75.2
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 4.5e-172 608.2 402 73.9
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 5.9e-172 607.8 308 91.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.9e-170 602.8 337 82.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-170 602.4 340 82.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.2e-170 602.1 435 70.8
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.2e-170 602.1 392 76.3
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.6e-169 599.7 401 74.8
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.0e-168 597.0 372 77.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.0e-168 597.0 301 91.0
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.0e-168 597.0 410 72.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.4e-168 596.7 353 79.3
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.8e-166 589.0 347 80.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 6.3e-166 587.8 365 77.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.6e-164 583.2 313 85.9
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.7e-164 582.4 387 75.2
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.5e-164 581.6 317 86.1
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.9e-162 576.2 357 78.2
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.7e-161 572.4 342 79.8
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 6.1e-161 571.2 345 79.1
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.3e-160 569.3 340 79.4
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 7.5e-159 564.3 402 69.9
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.7e-158 562.0 384 71.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.1e-157 560.5 418 69.4
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 9.1e-157 557.4 497 59.2
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.0e-155 553.9 401 71.1
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 7.2e-154 547.7 550 54.2
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 9.5e-154 547.4 566 53.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 8.0e-153 544.3 342 74.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.0e-152 542.0 348 73.6
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.4e-151 538.5 342 73.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 4.1e-149 531.9 333 74.2
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.5e-146 523.5 303 78.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.0e-135 486.5 243 88.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.4e-133 480.3 277 80.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.3e-130 469.2 336 67.9
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.1e-128 462.6 398 62.3
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.2e-124 450.7 307 68.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.0e-123 446.0 340 62.9
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.8e-118 429.1 282 74.5
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.9e-110 402.9 246 78.5
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 8.1e-105 384.8 339 56.9
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.3e-102 377.5 212 82.1
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.4e-102 375.2 341 54.8
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.4e-102 375.2 210 83.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-100 369.8 253 72.3
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.6e-92 342.4 204 78.4
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.7e-89 332.8 288 53.8
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 8.4e-86 321.6 202 76.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 3.0e-67 260.0 127 92.9
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.5e-66 257.7 317 43.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-66 257.7 322 41.9
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.0e-66 257.3 310 44.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.7e-66 255.8 319 42.0
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 9.7e-66 255.0 340 40.3
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.5e-58 231.1 311 40.5
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-56 224.6 182 65.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.7e-54 217.6 330 40.0
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.8e-51 207.6 247 41.7
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.9e-46 190.3 158 63.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.9e-46 190.3 113 83.2
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 6.6e-30 136.0 92 73.9
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.3e-25 121.7 56 92.9
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.5e-23 113.6 157 45.2
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 3.3e-21 107.1 62 87.1
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 4.0e-19 100.1 178 41.0
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.4e-16 91.7 93 58.1
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 7.0e-16 89.4 99 51.5
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-15 87.8 49 77.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 4.7e-12 76.6 34 91.2
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 9.9e-10 68.9 32 87.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 7.1e-08 62.8 31 80.6
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 6.6e-06 56.2 27 81.5


User provided reference genes

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