Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.4e-128 463.0 237 100.0
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 3.0e-123 445.3 236 96.6
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.2e-108 396.7 236 85.2
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 6.2e-105 384.4 230 83.5
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 4.0e-104 381.7 235 83.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 4.0e-104 381.7 236 81.4
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 5.8e-103 377.9 236 80.5
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.6e-103 377.5 236 80.5
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 7.6e-103 377.5 236 80.5
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 7.6e-103 377.5 238 80.7
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.3e-102 376.7 249 79.5
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 4.9e-102 374.8 236 83.1
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 4.9e-102 374.8 236 80.1
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 6.5e-102 374.4 236 78.4
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.4e-102 374.0 238 79.8
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.9e-101 372.9 236 81.4
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.2e-101 372.1 236 79.7
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 4.2e-101 371.7 236 80.1
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.5e-101 371.3 236 80.1
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.2e-100 370.2 235 79.6
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.2e-100 370.2 239 79.1
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.6e-100 369.8 237 79.3
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-100 369.8 237 79.3
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.7e-100 369.0 236 79.2
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.7e-100 369.0 238 79.0
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.7e-100 369.0 238 79.0
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.5e-100 368.6 236 79.2
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 4.6e-100 368.2 235 78.7
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 6.0e-100 367.9 237 79.3
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 6.0e-100 367.9 236 79.7
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 6.0e-100 367.9 237 78.1
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.0e-100 367.9 238 79.4
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.0e-100 367.9 238 79.0
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.0e-99 367.1 236 79.2
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.3e-99 366.7 235 79.6
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.8e-99 366.3 237 78.5
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.8e-99 366.3 236 79.2
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.8e-99 366.3 231 80.5
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.8e-99 366.3 237 77.6
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 2.3e-99 365.9 226 81.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-99 365.2 237 78.9
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 3.9e-99 365.2 237 78.9
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 3.9e-99 365.2 237 78.1
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 5.1e-99 364.8 236 78.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 5.1e-99 364.8 238 79.4
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.7e-99 364.4 236 77.5
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.5e-98 363.2 231 79.7
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.9e-98 362.8 230 79.1
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.9e-98 362.8 237 78.5
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 1.9e-98 362.8 235 76.6
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.5e-98 362.5 236 78.0
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.5e-98 362.5 238 76.5
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.5e-98 362.5 236 77.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.5e-98 362.5 236 77.1
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 2.5e-98 362.5 238 78.2
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.7e-98 361.3 236 77.5
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 5.7e-98 361.3 236 76.3
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 5.7e-98 361.3 235 76.6
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 7.4e-98 360.9 231 80.1
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 9.7e-98 360.5 239 77.4
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.6e-97 359.8 232 78.4
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 2.2e-97 359.4 232 79.3
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 3.7e-97 358.6 236 77.1
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 4.8e-97 358.2 237 74.7
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.1e-96 357.1 237 75.9
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.4e-96 356.7 236 76.7
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.4e-96 356.7 235 75.3
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.8e-96 356.3 231 77.9
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.8e-96 356.3 231 77.9
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.4e-96 355.9 236 77.5
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 2.4e-96 355.9 225 79.6
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.1e-96 355.1 236 76.7
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 4.1e-96 355.1 236 75.4
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 5.3e-96 354.8 236 76.7
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 6.9e-96 354.4 238 79.0
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.0e-96 354.0 238 73.5
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.0e-95 352.8 236 75.4
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.4e-95 352.1 238 76.9
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.9e-93 346.3 249 73.1
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 4.2e-93 345.1 235 71.9
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 4.2e-93 345.1 225 76.9
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 4.2e-93 345.1 248 72.6
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 5.5e-93 344.7 236 73.3
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.5e-93 344.7 242 74.0
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.2e-92 343.6 238 77.3
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.6e-92 342.0 237 75.1
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.0e-91 340.5 251 71.7
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.8e-91 339.7 236 73.3
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.8e-91 339.7 236 72.0
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 2.3e-91 339.3 236 73.3
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 1.1e-90 337.0 230 71.3
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.0e-90 336.3 263 66.9
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 3.3e-90 335.5 225 75.6
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 4.3e-90 335.1 295 63.1
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 4.3e-90 335.1 238 74.4
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.3e-89 333.6 236 74.2
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.7e-89 333.2 236 72.9
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.8e-89 332.4 236 73.3
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 4.8e-89 331.6 236 74.6
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 8.2e-89 330.9 240 70.4
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.4e-88 330.1 239 72.4
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.8e-88 329.7 238 71.8
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.8e-88 329.7 238 71.8
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 2.4e-88 329.3 236 71.2
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.4e-88 329.3 227 72.7
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 2.4e-88 329.3 231 73.6
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.1e-88 328.9 236 72.0
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 5.3e-88 328.2 236 73.7
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 9.1e-88 327.4 238 72.7
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.4e-87 325.5 225 73.8
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 5.0e-86 321.6 230 71.3
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 8.5e-86 320.9 236 71.2
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 1.4e-85 320.1 230 71.3
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.4e-85 320.1 231 73.6
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.9e-85 319.7 337 56.1
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 5.5e-85 318.2 236 72.9
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.1e-84 316.2 251 67.7
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.7e-81 306.6 239 66.1
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.4e-80 303.5 240 68.3
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 4.1e-80 302.0 284 59.9
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.8e-78 295.4 238 67.2
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.5e-78 294.7 296 57.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.1e-77 293.9 238 67.2
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 9.4e-77 290.8 238 63.9
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.2e-76 290.4 233 67.0
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 1.0e-75 287.3 230 67.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.4e-72 276.9 226 63.7
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 9.1e-72 274.2 242 63.2
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 2.6e-71 272.7 195 69.7
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 2.6e-71 272.7 233 63.1
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 1.0e-70 270.8 200 68.5
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.9e-70 269.2 229 64.2
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 5.0e-70 268.5 194 72.7
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.5e-69 266.2 181 76.8
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 3.2e-69 265.8 224 62.9
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 9.4e-69 264.2 201 70.6
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 8.0e-68 261.2 287 54.4
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 3.4e-66 255.8 227 62.1
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.3e-65 253.8 271 54.2
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 4.8e-65 251.9 226 61.9
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.6e-58 229.6 162 72.8
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.2e-55 220.7 141 80.9
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.9e-53 213.4 221 56.1
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 7.2e-53 211.5 224 51.3
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 4.7e-52 208.8 224 50.4
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 6.1e-52 208.4 233 51.5
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.0e-51 207.6 132 78.0
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.8e-51 206.8 196 57.7
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.8e-51 206.8 241 50.2
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 3.0e-51 206.1 139 71.9
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 9.2e-48 194.5 140 70.0
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.7e-46 190.3 141 68.1
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.3e-46 189.9 229 48.0
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 1.2e-44 184.1 132 68.2
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.0e-43 181.0 199 53.8
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.0e-43 179.1 166 60.8
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 2.0e-42 176.8 133 70.7
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 2.2e-41 173.3 114 77.2
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 4.9e-41 172.2 126 68.3
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 4.9e-41 172.2 126 68.3
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.4e-40 170.6 232 45.3
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.9e-37 160.2 139 61.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.7e-36 155.6 182 50.0
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 7.5e-34 148.3 162 51.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.2e-33 146.7 173 50.3
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.9e-33 146.4 91 74.7
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 2.1e-31 140.2 115 65.2
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.5e-29 134.0 74 85.1
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.4e-24 117.5 149 51.7
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.4e-24 116.7 71 78.9
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 7.8e-23 111.7 180 41.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 1.1e-21 107.8 74 71.6
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.2e-19 99.0 65 73.8
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.9e-16 90.5 74 62.2
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 3.3e-13 79.7 41 87.8
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 9.0e-11 71.6 97 42.3
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.4e-09 65.5 42 76.2


User provided reference genes

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