Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 5.2e-89 332.0 336 100.0
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 4.0e-57 226.1 330 80.6
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 4.0e-57 226.1 330 83.0
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 9.9e-56 221.5 330 81.5
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 3.8e-55 219.5 330 82.7
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 3.8e-55 219.5 331 80.4
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 8.4e-55 218.4 327 79.8
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 2.4e-54 216.9 330 67.3
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 2.4e-54 216.9 330 80.3
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 7.1e-54 215.3 324 83.3
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 9.3e-54 214.9 326 81.0
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 3.5e-53 213.0 331 81.3
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 7.9e-53 211.8 326 82.2
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 2.3e-52 210.3 331 81.3
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 5.1e-52 209.1 326 80.4
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 1.1e-51 208.0 326 68.7
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 1.5e-51 207.6 325 78.5
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 3.3e-51 206.5 324 79.9
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 4.3e-51 206.1 331 80.7
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 2.1e-50 203.8 326 80.1
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 8.1e-50 201.8 324 78.7
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 1.1e-49 201.4 322 82.0
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 1.1e-49 201.4 328 78.0
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.8e-49 200.7 318 82.1
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 4.0e-49 199.5 322 79.8
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 3.4e-48 196.4 328 73.8
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 3.4e-48 196.4 327 78.3
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 7.6e-48 195.3 326 79.4
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 7.6e-48 195.3 328 73.2
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 7.6e-48 195.3 328 79.6
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 7.6e-48 195.3 327 78.9
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 1.7e-47 194.1 329 78.4
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 1.7e-47 194.1 329 78.4
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 1.7e-47 194.1 327 78.6
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 2.2e-47 193.7 328 75.3
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.2e-47 193.7 328 79.0
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 2.9e-47 193.4 322 79.2
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 2.9e-47 193.4 314 81.2
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 3.8e-47 193.0 330 76.7
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 3.8e-47 193.0 328 75.3
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 4.9e-47 192.6 326 77.9
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 4.9e-47 192.6 326 78.2
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 6.5e-47 192.2 322 80.4
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 3.2e-46 189.9 329 77.5
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 3.2e-46 189.9 329 77.5
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.6e-45 187.6 315 80.6
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 2.1e-45 187.2 330 73.9
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 2.7e-45 186.8 327 79.2
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 2.7e-45 186.8 329 77.2
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 3.5e-45 186.4 319 76.8
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 3.5e-45 186.4 327 77.1
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 4.6e-45 186.0 324 75.6
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 6.0e-45 185.7 321 79.4
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 7.9e-45 185.3 330 75.8
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 7.9e-45 185.3 330 75.8
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 1.3e-44 184.5 321 77.6
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 3.0e-44 183.3 330 76.1
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 6.7e-44 182.2 322 77.6
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 1.1e-43 181.4 322 77.3
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 1.9e-43 180.6 326 73.9
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 2.5e-43 180.3 322 81.1
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 2.5e-43 180.3 331 75.2
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 1.3e-42 177.9 322 77.0
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 3.7e-42 176.4 328 69.8
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 4.8e-42 176.0 311 81.0
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 4.8e-42 176.0 332 49.1
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 4.8e-42 176.0 371 62.8
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 6.2e-42 175.6 324 76.2
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 6.2e-42 175.6 314 78.0
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 1.8e-41 174.1 331 76.7
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 9.0e-41 171.8 326 78.2
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.2e-40 171.4 327 74.3
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 1.5e-40 171.0 327 75.2
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 1.5e-40 171.0 324 77.2
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.3e-39 167.9 328 74.4
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 2.2e-39 167.2 328 74.4
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 6.5e-39 165.6 324 69.8
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 5.5e-38 162.5 328 66.8
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 7.1e-38 162.2 322 77.0
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.2e-37 161.4 322 77.0
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 1.6e-37 161.0 307 79.5
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 6.1e-37 159.1 322 73.0
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 6.1e-37 159.1 322 65.8
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 5.1e-36 156.0 322 65.5
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 6.7e-36 155.6 334 63.8
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 1.5e-35 154.5 331 71.0
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 3.7e-34 149.8 321 63.6
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 6.3e-34 149.1 322 65.5
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.1e-33 148.3 302 77.2
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 3.1e-33 146.7 320 67.5
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 3.1e-33 146.7 300 79.7
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 1.5e-32 144.4 96 70.8
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 8.5e-31 138.7 329 67.8
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 1.1e-30 138.3 329 67.8
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 1.4e-30 137.9 329 67.5
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 1.4e-30 137.9 329 67.5
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 5.5e-30 136.0 295 41.4
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 4.6e-29 132.9 331 52.3
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 7.9e-29 132.1 279 81.7
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 7.9e-29 132.1 333 60.1
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.5e-27 127.9 277 82.7
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.5e-27 127.1 87 62.1
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 5.7e-27 125.9 286 77.6
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 3.7e-26 123.2 322 45.0
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.4e-25 121.3 80 70.0
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.4e-25 120.6 277 81.6
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.7e-21 106.3 70 71.4
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.8e-18 97.1 64 67.2
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 5.0e-15 86.3 59 64.4
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 8.5e-15 85.5 59 62.7
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.4e-12 78.2 61 57.4
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.3e-10 71.6 100 45.0
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 4.8e-10 69.7 86 40.7
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 9.1e-09 65.5 60 48.3
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 2.6e-08 63.9 93 36.6
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 3.5e-08 63.5 69 42.0
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.5e-08 63.5 58 50.0
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 7.7e-08 62.4 60 45.0
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 1.0e-07 62.0 58 48.3
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.0e-07 62.0 58 48.3
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.0e-07 62.0 58 48.3
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 2.2e-07 60.8 68 38.2
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 2.9e-07 60.5 60 45.0
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 2.9e-07 60.5 60 41.7
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 5.0e-07 59.7 60 43.3
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 6.5e-07 59.3 60 43.3
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 8.5e-07 58.9 66 39.4
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 8.5e-07 58.9 57 45.6
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 1.1e-06 58.5 63 41.3
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 1.1e-06 58.5 63 41.3
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.1e-06 58.5 43 60.5
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 1.5e-06 58.2 40 62.5
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 1.5e-06 58.2 59 42.4
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 1.9e-06 57.8 67 41.8
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 1.9e-06 57.8 57 40.4
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 2.5e-06 57.4 72 40.3
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 2.5e-06 57.4 59 42.4
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 2.5e-06 57.4 60 41.7
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 3.2e-06 57.0 60 41.7
Eucgr.J03191 Eucalyptus grandis HOM05D005956 ORTHO05D007197 3.2e-06 57.0 64 39.1
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 3.2e-06 57.0 42 57.1
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 4.2e-06 56.6 60 43.3
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 4.2e-06 56.6 67 35.8
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 5.5e-06 56.2 59 40.7
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 5.5e-06 56.2 60 40.0
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 5.5e-06 56.2 59 42.4
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 5.5e-06 56.2 58 41.4
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 7.2e-06 55.8 63 41.3
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 7.2e-06 55.8 65 38.5
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 7.2e-06 55.8 57 42.1
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 7.2e-06 55.8 60 40.0
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 9.4e-06 55.5 58 41.4
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 9.4e-06 55.5 55 41.8


User provided reference genes

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