Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.2e-130 469.2 272 100.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.6e-117 426.4 233 92.7
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.6e-117 426.4 233 92.7
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 9.0e-116 420.6 233 92.7
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.6e-115 419.1 235 91.9
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 4.5e-115 418.3 233 90.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 4.5e-115 418.3 233 90.6
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 5.9e-115 417.9 234 91.9
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.0e-114 417.2 233 89.7
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.0e-114 417.2 233 90.1
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.0e-114 417.2 233 89.3
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.3e-114 416.8 233 90.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.3e-114 416.8 233 91.4
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.3e-114 416.8 233 90.6
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.2e-114 416.0 232 90.1
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.2e-114 416.0 233 90.1
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 2.9e-114 415.6 233 91.8
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 3.8e-114 415.2 234 90.6
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 5.0e-114 414.8 233 90.1
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.5e-114 414.5 233 91.0
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 8.4e-114 414.1 233 90.1
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 4.2e-113 411.8 233 90.1
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 4.2e-113 411.8 233 88.4
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.5e-113 411.4 233 90.1
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.2e-113 411.0 234 90.6
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-112 410.2 233 88.8
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-112 410.2 233 88.8
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-112 410.2 233 88.8
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.6e-112 409.8 233 89.3
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.6e-112 409.8 232 88.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 2.1e-112 409.5 222 91.9
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.7e-112 409.1 234 89.7
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.5e-112 408.7 234 89.7
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.0e-111 407.1 233 88.4
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.0e-111 407.1 235 88.9
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.0e-111 407.1 233 87.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 8.7e-111 404.1 233 87.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 8.7e-111 404.1 233 86.3
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-110 403.7 233 87.6
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-110 403.7 233 87.6
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.5e-110 403.3 232 87.9
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 9.7e-110 400.6 233 85.8
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.3e-109 400.2 234 87.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.3e-109 400.2 233 85.8
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.6e-109 399.8 232 86.2
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.8e-109 399.1 233 85.4
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 3.7e-109 398.7 233 86.3
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.8e-109 398.3 236 86.9
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.8e-108 396.4 224 87.5
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.9e-108 394.4 233 86.3
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.0e-107 392.9 260 80.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.4e-107 392.1 234 84.2
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.7e-107 391.0 265 78.9
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.0e-106 390.6 233 82.4
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.3e-106 390.2 235 86.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.7e-106 389.8 226 85.4
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 2.2e-106 389.4 235 83.4
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.2e-106 389.4 233 85.4
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 8.5e-106 387.5 233 82.0
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 8.5e-106 387.5 234 82.5
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.5e-106 387.5 233 84.1
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.1e-105 387.1 233 85.8
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.9e-105 386.3 233 83.3
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 7.2e-105 384.4 233 83.3
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 9.4e-105 384.0 234 82.1
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 9.4e-105 384.0 234 82.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 7.9e-104 380.9 233 79.8
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.4e-103 380.2 249 78.3
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.4e-103 380.2 276 72.8
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 3.0e-103 379.0 237 81.4
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 6.7e-103 377.9 233 81.1
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 8.8e-103 377.5 233 82.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 8.8e-103 377.5 233 81.5
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 8.8e-103 377.5 237 81.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.5e-102 376.7 239 84.1
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 4.3e-102 375.2 233 83.3
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 4.3e-102 375.2 233 81.5
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 5.7e-102 374.8 255 77.6
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.3e-101 373.6 233 80.7
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.8e-101 372.5 233 80.7
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.1e-100 370.5 227 82.8
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.1e-100 370.5 257 78.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.4e-100 369.4 234 80.3
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.1e-100 369.0 234 80.8
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.1e-100 369.0 234 80.8
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.5e-99 366.7 234 80.8
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.0e-99 366.3 230 81.7
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.6e-99 365.9 227 79.7
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.4e-99 365.5 233 79.4
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 4.5e-99 365.2 235 80.0
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 7.7e-99 364.4 234 78.2
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.3e-98 363.6 233 80.3
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.9e-98 362.5 272 71.3
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 6.5e-98 361.3 257 73.9
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 8.5e-98 360.9 233 81.5
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.5e-97 359.4 261 72.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.5e-97 359.4 273 72.2
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.9e-96 354.4 233 79.8
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.9e-96 354.4 233 79.8
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 7.9e-96 354.4 270 71.5
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.8e-95 353.2 242 76.0
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.1e-94 350.5 236 75.0
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.0e-94 349.7 233 70.4
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.0e-94 349.7 242 76.4
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.6e-94 349.4 228 76.8
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 3.3e-94 349.0 256 71.9
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.2e-93 346.3 236 74.2
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.7e-91 337.8 233 71.2
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.0e-90 337.4 241 76.8
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.9e-89 333.2 212 80.2
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 4.0e-87 325.5 176 92.0
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.0e-84 314.7 233 65.2
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.1e-84 314.3 221 69.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.0e-82 308.5 224 68.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 3.2e-81 305.8 222 70.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.8e-76 290.0 233 68.2
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.1e-76 289.3 230 64.8
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.6e-75 287.0 233 64.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.7e-75 286.2 229 67.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.3e-74 283.9 235 65.5
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.3e-74 283.9 235 65.5
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.8e-74 282.3 233 63.5
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-73 280.4 165 86.7
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.8e-71 273.5 237 63.7
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 6.8e-71 271.6 246 59.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.4e-62 242.7 226 58.4
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 3.6e-56 222.6 141 82.3
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 8.0e-56 221.5 150 76.7
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.0e-56 221.5 163 64.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.7e-50 203.8 141 75.2
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.8e-47 193.7 96 96.9
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.5e-46 190.7 96 93.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.4e-46 189.5 104 85.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 2.7e-43 179.9 206 56.3
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.5e-41 171.4 107 84.1
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 9.5e-41 171.4 130 66.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.1e-40 170.2 95 84.2
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-39 167.5 104 78.8
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.4e-38 162.9 122 72.1
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.9e-36 157.1 78 96.2
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 7.3e-33 145.2 77 88.3
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 8.1e-32 141.7 83 84.3
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.4e-30 136.3 232 37.9
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 9.9e-30 134.8 217 40.6
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 4.9e-29 132.5 239 33.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 8.4e-29 131.7 118 61.9
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 8.4e-29 131.7 118 61.9
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 3.2e-28 129.8 118 61.9
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 4.2e-28 129.4 105 66.7
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 7.1e-28 128.6 122 59.0
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 7.1e-28 128.6 122 59.0
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.6e-27 127.5 118 61.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.7e-26 124.0 118 60.2
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 3.9e-26 122.9 118 59.3
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 8.1e-24 115.2 233 32.2
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.0e-23 111.7 234 33.8
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 3.4e-22 109.8 87 64.4
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-21 107.8 76 75.0
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.7e-21 107.5 87 63.2
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.1e-20 104.8 87 63.2
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 4.2e-20 102.8 87 62.1
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.2e-16 89.0 45 95.6
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.2e-13 80.5 46 78.3
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.1e-12 78.2 43 86.0
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 4.6e-11 72.8 54 66.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 3.9e-10 69.7 42 81.0


User provided reference genes

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