Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 3018.8 1506 100.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 2174.4 1514 72.0
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 2049.6 1618 65.6
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 2025.0 1510 66.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 2018.0 1501 66.8
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 2010.0 1507 67.0
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 2000.7 1500 66.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1973.7 1511 65.3
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1920.2 1543 64.4
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1913.3 1508 63.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1910.2 1515 64.2
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1904.8 1534 62.8
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1899.4 1510 63.6
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1897.9 1506 64.5
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1874.8 1539 61.9
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1872.4 1509 61.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1862.4 1516 61.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1857.0 1458 63.4
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1849.3 1517 61.4
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1821.6 1518 61.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1802.7 1498 60.7
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1800.4 1505 61.8
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1782.7 1516 60.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1775.0 1435 63.3
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1773.8 1502 59.8
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1767.3 1509 58.8
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1760.0 1520 59.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1752.3 1509 58.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1751.9 1503 59.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1750.3 1288 67.8
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1749.6 1507 59.4
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1743.0 1504 59.0
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1742.6 1504 58.2
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1739.9 1502 58.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1734.2 1503 58.3
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1730.7 1501 58.0
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1719.9 1515 58.0
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1716.0 1512 57.9
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1702.6 1508 57.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1702.2 1501 58.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1694.5 1516 56.1
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1689.5 1505 58.1
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1682.2 1526 56.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1682.2 1526 56.5
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1677.5 1512 56.4
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1668.7 1504 56.9
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1666.7 1517 55.8
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1666.4 1515 56.0
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1666.0 1501 56.0
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1664.4 1536 55.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1658.3 1512 56.7
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1652.9 1202 69.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1645.9 1509 55.9
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1622.8 1500 54.9
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1622.8 1243 65.9
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1618.2 1498 54.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1610.1 1509 55.0
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1602.0 1521 55.3
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1592.8 1522 53.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1568.1 1525 53.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1567.4 1507 53.5
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1551.2 1513 54.3
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1550.4 1505 53.4
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1531.2 1516 54.5
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1528.5 1514 53.9
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1517.7 1509 54.0
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1514.2 1516 53.8
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1507.3 1514 53.8
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1499.6 1510 53.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1495.3 1512 53.2
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1491.5 1513 53.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1486.1 1539 52.4
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1482.2 1458 52.9
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1481.1 1542 52.2
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1466.4 1504 52.4
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1454.9 1518 52.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1452.6 1508 49.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1452.2 1498 51.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1445.3 1750 45.5
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1430.6 1521 51.5
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1397.5 1521 50.1
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1393.6 1392 53.5
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1392.1 1159 60.6
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1354.3 1292 55.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1322.0 1052 63.8
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1313.9 1132 58.3
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1312.7 1124 60.0
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1305.4 1106 59.2
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1298.1 1551 46.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1282.7 1539 46.0
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1240.3 1511 44.8
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1191.4 988 60.5
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.3e-284 982.2 1151 46.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 3.8e-272 942.6 1024 51.0
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.3e-258 895.6 1153 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.8e-250 870.5 1530 35.8
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 7.2e-247 858.6 593 71.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 7.0e-242 842.0 573 72.3
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 2.2e-240 837.0 1534 35.0
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 5.0e-240 835.9 1536 34.9
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.5e-224 781.9 973 43.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 3.3e-215 753.4 1020 44.4
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-214 751.1 1021 44.2
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.0e-213 748.4 639 60.1
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-213 748.4 1023 43.8
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 4.4e-212 743.0 572 64.3
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.1e-210 736.5 601 61.2
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.8e-198 697.2 619 58.5
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 8.6e-192 675.6 1403 33.1
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 6.9e-157 559.7 479 60.1
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.4e-155 552.7 577 51.8
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.2e-140 505.8 1072 35.0
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.3e-139 502.3 567 47.1
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 6.3e-134 483.4 529 51.4
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 7.7e-132 476.5 565 45.5
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-114 417.2 992 28.6
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.7e-113 414.8 503 45.5
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 2.4e-101 375.2 454 45.6
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 6.4e-94 350.5 302 60.9
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-93 349.4 542 38.6
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 3.3e-90 338.2 362 48.6
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 2.8e-89 335.1 453 45.0
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.9e-86 325.1 321 51.7
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.9e-82 312.4 389 44.7
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.5e-79 302.8 806 28.9
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 5.8e-79 300.8 414 46.4
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 9.8e-79 300.1 212 66.0
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 6.6e-75 287.3 276 54.3
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 6.2e-73 280.8 307 47.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 2.0e-71 275.8 471 36.3
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.6e-71 273.9 324 42.3
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.8e-64 250.8 292 46.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.8e-63 247.7 232 56.0
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 9.9e-63 246.9 213 56.8
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.2e-62 245.7 249 52.6
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.4e-61 243.0 193 61.7
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.1e-58 233.4 358 36.9
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-56 225.3 283 43.8
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.6e-55 220.7 312 39.1
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.3e-48 198.0 133 66.9
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 3.2e-45 188.7 124 71.8
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.2e-44 186.8 196 51.0
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-43 183.7 198 51.0
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.0e-43 183.7 192 50.5
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 3.7e-41 175.3 187 52.4
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 3.7e-41 175.3 388 33.5
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.4e-39 168.7 254 41.3
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.2e-38 166.0 117 62.4
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 7.4e-34 151.0 118 60.2
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 6.3e-33 147.9 116 62.1
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 4.1e-32 145.2 149 47.0
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.9e-29 136.3 126 51.6
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 8.2e-25 120.9 115 53.9
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.9e-23 114.8 95 63.2
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-22 112.5 95 62.1
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-21 108.2 240 30.4
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 9.4e-21 107.5 684 22.8
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.0e-11 75.9 195 32.3
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 8.8e-11 74.3 68 55.9
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-09 70.5 144 35.4
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.7e-09 70.1 61 50.8
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 2.2e-09 69.7 105 43.8
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 3.1e-08 65.9 96 35.4
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 3.1e-08 65.9 42 71.4
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 4.1e-08 65.5 47 63.8
SEGI_12379 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.6e-07 62.8 69 47.8
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 4.5e-07 62.0 96 34.4
AagrBONN_evm.TU.Sc2ySwM_340.1693 Anthoceros agrestis HOM05D000250 ORTHO05D015314 5.0e-06 58.5 48 56.2


User provided reference genes

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