Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.0e-101 372.5 190 100.0
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.9e-78 293.9 190 77.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.8e-77 291.2 190 77.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 8.6e-73 277.3 191 77.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.1e-72 276.9 218 68.8
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.5e-72 276.6 190 75.8
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 5.6e-72 274.6 188 76.6
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.2e-69 266.9 188 73.4
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.5e-69 266.5 188 72.9
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 9.9e-69 263.8 192 74.5
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.1e-67 260.4 188 73.4
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.1e-67 260.4 189 74.6
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.4e-67 260.0 190 71.6
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.4e-67 260.0 189 73.5
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.4e-67 259.2 188 72.3
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 5.4e-67 258.1 189 73.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 7.1e-67 257.7 190 73.7
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 7.1e-67 257.7 188 70.7
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 7.1e-67 257.7 188 71.8
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 9.2e-67 257.3 189 73.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.2e-66 256.9 188 73.4
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.6e-66 256.5 190 73.7
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.7e-66 255.8 192 72.4
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.7e-66 255.8 189 74.1
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.7e-66 255.8 189 73.5
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 71.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 70.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 70.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 70.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 70.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.6e-66 255.0 189 74.1
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.0e-65 253.8 189 72.0
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.0e-65 253.8 190 70.5
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.0e-65 253.8 188 73.4
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.3e-65 253.4 188 70.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.3e-65 253.4 188 70.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.7e-65 253.1 188 71.3
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 3.0e-65 252.3 189 72.5
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 6.6e-65 251.1 187 72.7
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 6.6e-65 251.1 191 72.3
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 8.6e-65 250.8 188 72.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.1e-64 250.4 217 61.8
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.5e-64 250.0 196 72.4
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.5e-64 250.0 188 73.4
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.9e-64 249.6 189 72.5
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.5e-64 249.2 188 69.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 2.5e-64 249.2 187 69.0
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.3e-64 248.8 190 70.5
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.3e-64 248.8 194 71.6
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 3.3e-64 248.8 187 70.1
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 4.3e-64 248.4 190 70.5
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.3e-64 248.4 190 70.0
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 7.3e-64 247.7 190 68.9
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 7.3e-64 247.7 192 70.3
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 7.3e-64 247.7 192 70.3
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 7.3e-64 247.7 191 69.6
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-64 247.7 191 69.6
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-64 247.7 191 69.6
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 7.3e-64 247.7 191 69.6
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 7.3e-64 247.7 190 69.5
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 9.6e-64 247.3 190 70.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 9.6e-64 247.3 190 70.5
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.2e-63 246.9 188 69.1
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.2e-63 246.9 187 69.5
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.2e-63 246.9 188 69.1
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.6e-63 246.5 190 68.9
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 2.8e-63 245.7 190 67.9
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.8e-63 245.7 190 69.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-63 245.7 192 69.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-63 245.7 192 69.8
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.8e-63 245.7 188 72.3
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 67.7
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.1e-62 243.8 187 71.1
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.1e-62 243.8 179 70.4
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.4e-62 243.4 191 69.6
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.1e-62 242.3 189 68.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 4.0e-62 241.9 186 72.6
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 4.0e-62 241.9 192 66.1
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 5.2e-62 241.5 192 68.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.2e-61 240.4 191 72.8
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.2e-61 240.4 187 67.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.2e-61 240.4 189 70.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.8e-61 238.0 190 69.5
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 7.6e-61 237.7 182 72.0
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.3e-60 236.9 190 68.9
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.7e-60 236.5 190 68.9
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.9e-60 235.7 187 67.9
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 2.9e-60 235.7 226 58.4
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.8e-60 235.3 173 71.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 4.9e-60 235.0 190 67.4
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.9e-59 233.0 185 65.9
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-59 232.3 160 78.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-58 229.6 137 86.1
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.7e-58 229.2 188 69.7
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.6e-58 228.4 187 65.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.8e-58 227.6 137 84.7
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.8e-58 227.6 137 84.7
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.3e-57 226.9 127 89.0
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 3.0e-57 225.7 160 73.8
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.0e-57 225.7 174 71.3
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 5.1e-57 224.9 140 84.3
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 5.1e-57 224.9 205 62.9
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 6.6e-57 224.6 139 83.5
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 8.7e-57 224.2 189 62.4
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.5e-56 223.4 187 68.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.9e-56 223.0 171 71.9
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.5e-56 222.6 136 83.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.5e-56 222.6 180 69.4
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 7.3e-56 221.1 135 83.7
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 7.3e-56 221.1 181 68.5
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.6e-55 219.9 189 65.6
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.8e-55 219.2 163 73.6
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 3.6e-55 218.8 192 65.1
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.1e-54 217.2 126 86.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.4e-54 216.1 125 87.2
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 6.9e-54 214.5 185 66.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.0e-53 213.0 124 85.5
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 2.6e-53 212.6 124 86.3
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 3.4e-53 212.2 168 70.2
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 6.4e-52 208.0 188 63.8
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.2e-51 205.3 125 82.4
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.7e-50 202.6 158 67.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-49 198.7 198 58.1
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 5.1e-49 198.4 208 56.7
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.7e-49 197.6 191 62.8
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 2.5e-48 196.1 176 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 5.6e-48 194.9 157 68.2
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 7.3e-48 194.5 132 73.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.3e-47 193.7 146 73.3
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.3e-47 193.7 189 59.8
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-47 193.4 150 70.7
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 2.1e-47 193.0 150 70.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 2.1e-47 193.0 157 66.9
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-47 192.2 200 57.0
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.6e-47 192.2 157 66.2
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 4.8e-47 191.8 150 70.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.8e-47 191.8 178 59.6
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 2.4e-46 189.5 158 67.1
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 6.9e-46 188.0 132 72.0
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 6.9e-46 188.0 176 59.7
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 9.9e-45 184.1 171 60.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 3.9e-41 172.2 201 53.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 4.8e-39 165.2 140 62.1
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.5e-37 160.2 129 63.6
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 4.5e-37 158.7 124 63.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.0e-36 157.5 196 50.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.9e-36 155.2 148 58.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.4e-35 153.7 198 50.0
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.2e-35 152.5 153 56.2
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 4.6e-34 148.7 129 58.9
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 4.6e-34 148.7 191 49.7
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.0e-33 147.5 95 82.1
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 3.0e-33 146.0 147 55.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.1e-33 145.2 115 64.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.7e-32 141.7 139 56.1
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-30 136.7 78 87.2
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.1e-30 136.0 107 60.7
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.5e-29 133.7 124 62.9
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.9e-29 131.7 110 60.9
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.9e-27 126.7 155 50.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.1e-26 121.7 111 59.5
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.3e-25 120.6 68 86.8
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.4e-24 114.8 68 85.3
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.8e-23 112.8 68 83.8
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.8e-17 91.3 60 73.3
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 2.5e-16 89.7 129 45.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.5e-16 89.7 70 65.7
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 4.3e-16 89.0 129 45.7
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 4.3e-16 89.0 67 71.6
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.7e-16 88.6 69 63.8
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 9.7e-16 87.8 67 70.1
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-15 87.4 47 89.4
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.1e-14 82.8 125 37.6
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 3.9e-09 65.9 88 48.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 3.7e-07 59.3 46 63.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 4.8e-07 58.9 58 55.2
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 8.2e-07 58.2 58 55.2
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 5.3e-06 55.5 58 53.4
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 9.1e-06 54.7 30 83.3


User provided reference genes

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