Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 0.0e+00 1224.5 615 100.0
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 0.0e+00 1083.6 618 87.9
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 0.0e+00 1082.8 616 88.5
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.2e-312 1073.9 618 87.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 585 86.5
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.3e-295 1019.2 621 83.1
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.2e-295 1018.5 620 80.8
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.9e-295 1018.1 620 80.8
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.9e-295 1017.3 624 82.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 4.9e-295 1017.3 615 82.4
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 8.4e-295 1016.5 615 82.6
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.1e-294 1016.1 615 80.8
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 581 85.7
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.4e-294 1015.0 622 81.8
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 620 81.5
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 581 85.4
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 5.5e-294 1013.8 621 82.1
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 5.5e-294 1013.8 625 81.6
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 620 81.8
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 615 80.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.5e-293 1011.1 615 82.3
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.5e-293 1011.1 615 80.8
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.9e-293 1010.0 616 81.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.3e-292 1009.2 621 80.7
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 618 82.7
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 626 81.2
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 621 81.6
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 619 81.4
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 624 81.1
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 617 82.3
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 615 82.0
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 590 84.1
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 615 81.1
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 615 81.1
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 615 82.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 623 80.4
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 618 80.6
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 8.1e-290 1000.0 613 81.1
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.1e-289 999.6 615 81.1
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-289 999.2 618 81.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 6.9e-289 996.9 617 81.0
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 9.0e-289 996.5 589 83.9
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.0e-289 996.5 577 84.9
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 9.0e-289 996.5 600 82.3
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.2e-288 996.1 617 80.9
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.5e-288 995.7 576 85.2
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.0e-288 995.3 617 81.2
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.4e-288 994.6 629 79.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.5e-288 994.2 568 85.9
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.5e-288 994.2 615 81.3
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.0e-287 993.0 620 79.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.0e-287 993.0 611 81.2
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.3e-287 992.6 557 86.5
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.7e-287 992.3 620 79.0
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.2e-287 991.9 598 82.9
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 3.8e-287 991.1 618 80.7
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.8e-287 991.1 618 80.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.8e-287 991.1 573 85.2
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.9e-287 990.7 577 84.6
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.1e-286 989.6 653 78.4
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.4e-286 989.2 619 80.3
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-286 989.2 557 86.7
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.4e-286 989.2 558 87.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.9e-286 988.8 587 83.0
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 4.2e-286 987.6 615 79.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 571 85.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 7.1e-286 986.9 615 79.7
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 9.3e-286 986.5 626 78.9
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.1e-285 985.3 615 79.3
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.1e-285 985.3 615 79.3
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 3.5e-285 984.6 617 80.4
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.0e-284 983.0 619 80.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.3e-284 982.6 617 79.7
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.0e-284 981.5 605 80.7
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.1e-283 979.5 615 78.9
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.5e-283 979.2 586 81.9
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.5e-283 979.2 617 79.9
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.9e-283 978.8 616 80.2
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.9e-283 978.8 572 85.0
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.9e-283 978.8 572 85.0
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.9e-283 978.8 616 80.2
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 4.3e-283 977.6 581 82.8
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 5.7e-283 977.2 622 80.2
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 5.7e-283 977.2 572 85.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 5.7e-283 977.2 572 85.0
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 5.7e-283 977.2 586 81.9
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 7.4e-283 976.9 558 85.1
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.3e-282 976.1 558 84.9
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.7e-282 974.5 571 83.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 6.3e-282 973.8 607 80.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 6.3e-282 973.8 617 79.7
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.4e-281 972.6 617 79.1
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 2.4e-281 971.8 573 84.3
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.2e-280 969.5 582 81.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.4e-280 968.0 573 82.7
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.3e-279 966.1 586 82.8
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 5.0e-279 964.1 638 76.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.1e-278 963.0 599 80.6
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.4e-278 962.6 608 78.9
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.2e-278 961.1 618 77.7
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.7e-277 958.4 575 81.7
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.0e-276 956.4 567 81.1
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.8e-276 955.7 558 84.2
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.9e-276 954.5 628 76.9
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.9e-275 952.2 650 75.2
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 3.7e-274 948.0 625 76.8
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.8e-274 947.6 663 73.3
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.2e-272 943.0 588 79.3
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.7e-271 939.1 574 79.6
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.5e-270 935.3 570 80.2
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 4.2e-270 934.5 577 78.2
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.6e-269 932.6 527 85.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.6e-269 931.0 694 70.5
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.4e-268 929.5 532 86.1
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.2e-263 912.1 621 75.2
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 7.2e-262 907.1 559 77.6
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.8e-258 894.4 558 78.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.2e-256 889.8 576 78.1
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.0e-256 889.0 627 72.1
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.2e-253 879.8 527 81.2
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.3e-252 875.5 539 80.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 4.1e-249 864.8 627 71.6
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.1e-245 852.4 589 74.5
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 5.0e-239 831.2 557 70.9
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.6e-237 826.2 568 70.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.2e-226 789.3 545 70.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.2e-226 789.3 490 79.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 9.2e-225 783.9 490 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 4.3e-222 775.0 490 78.6
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.6e-221 773.1 488 79.9
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.0e-215 751.5 426 86.2
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.6e-215 750.7 433 84.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 4.9e-210 734.9 433 81.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.2e-209 732.3 490 76.5
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 8.1e-205 717.6 564 62.8
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.4e-202 708.0 422 82.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.4e-187 659.1 403 81.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.7e-178 630.2 433 74.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.9e-170 602.8 598 52.5
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.2e-157 558.1 312 88.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.4e-147 526.2 384 71.9
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.6e-128 464.2 339 72.6
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 8.9e-119 431.8 288 76.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 9.8e-118 428.3 277 76.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 4.6e-91 339.7 216 77.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.7e-77 294.7 218 71.6
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 9.3e-76 288.9 557 33.9
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.7e-75 287.3 157 87.9
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.2e-69 267.7 150 84.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.5e-59 233.8 131 83.2
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.5e-57 228.4 133 76.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 9.6e-57 225.7 126 85.7
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.9e-52 211.5 184 63.6
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.2e-51 208.8 116 91.4
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.1e-51 208.0 144 72.9
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.8e-50 204.9 114 82.5
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.7e-48 197.2 145 69.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 6.3e-48 196.4 115 79.1
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.2e-45 188.0 105 81.0
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.5e-45 186.4 115 76.5
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.5e-41 174.5 149 64.4
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 9.7e-41 172.6 122 70.5
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 5.3e-39 166.8 251 44.6
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 9.1e-39 166.0 223 47.5
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 6.1e-27 126.7 116 59.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 6.7e-26 123.2 61 93.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.3e-24 119.0 212 37.3
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.4e-23 114.8 70 72.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.9e-21 107.8 56 91.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.3e-16 92.4 182 32.4
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.3e-15 87.0 64 64.1
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 5.5e-12 77.0 67 52.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 5.2e-10 70.5 93 46.2
SMO199G0036 Selaginella moellendorffii HOM05D018282 ORTHO05D378716 7.7e-06 56.6 55 56.4


User provided reference genes

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