Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.4e-98 362.8 176 100.0
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.6e-68 263.1 176 71.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.8e-65 252.3 175 66.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.6e-63 245.7 176 68.2
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 4.4e-63 245.0 177 68.4
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 5.7e-63 244.6 177 68.4
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 5.7e-63 244.6 176 64.2
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.2e-62 242.7 176 67.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.9e-62 241.5 176 67.6
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.4e-61 240.0 186 61.8
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.4e-61 240.0 175 64.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.4e-61 239.2 196 60.2
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.1e-61 238.4 176 65.9
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 9.2e-61 237.3 176 68.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.2e-60 236.9 196 59.7
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.6e-60 236.5 186 60.8
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.5e-60 235.3 171 66.7
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 3.5e-60 235.3 183 62.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.5e-60 235.0 186 61.3
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 5.9e-60 234.6 175 62.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-59 233.8 175 62.3
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.7e-59 233.0 176 63.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.3e-59 232.6 175 62.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.3e-59 232.6 175 62.3
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.3e-59 232.6 182 64.8
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.6e-59 231.1 175 61.7
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.9e-58 229.6 176 60.8
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.3e-58 228.8 175 61.1
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.3e-58 228.8 180 64.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 5.6e-58 228.0 196 58.2
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 5.6e-58 228.0 175 61.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.6e-58 228.0 177 61.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.5e-58 227.3 176 60.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 8.0e-57 224.2 182 60.4
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.0e-56 222.2 175 61.1
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 3.0e-56 222.2 150 68.0
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.4e-55 218.8 176 61.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.7e-54 215.3 173 57.8
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 3.2e-53 212.2 182 60.4
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 5.4e-53 211.5 172 57.0
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.4e-53 211.5 175 57.1
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-52 210.3 203 51.2
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.2e-52 210.3 176 56.8
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.7e-52 209.1 176 58.0
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 5.9e-52 208.0 203 50.7
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.0e-51 205.7 163 58.9
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.0e-51 204.9 175 56.6
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.6e-51 204.5 175 54.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.1e-50 203.8 175 53.7
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.1e-50 203.8 175 53.7
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-50 203.4 175 56.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.5e-50 202.6 175 55.4
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.3e-50 202.2 113 76.1
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.3e-50 201.8 132 67.4
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.3e-50 201.8 177 57.6
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.6e-50 201.4 167 57.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.3e-50 201.1 118 72.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.1e-49 199.5 120 72.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 3.6e-49 198.7 162 56.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.7e-49 198.4 120 70.0
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 6.2e-49 198.0 138 65.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 8.0e-49 197.6 166 55.4
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-48 196.8 143 62.9
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.8e-48 196.4 175 54.3
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 4.0e-48 195.3 175 56.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.2e-48 194.9 120 70.0
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.2e-48 194.9 176 56.2
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 6.8e-48 194.5 171 56.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-47 193.4 175 52.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-47 193.0 138 63.8
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.4e-47 192.2 166 57.2
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.4e-47 191.8 159 58.5
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 4.4e-47 191.8 126 68.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 5.8e-47 191.4 132 64.4
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 7.5e-47 191.0 166 57.2
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.5e-47 191.0 199 50.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 7.5e-47 191.0 135 62.2
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.5e-47 191.0 162 55.6
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.3e-46 190.3 118 69.5
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.9e-46 189.1 159 54.1
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.9e-46 189.1 175 56.0
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 6.4e-46 188.0 162 54.3
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.4e-46 188.0 175 50.3
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 8.3e-46 187.6 114 68.4
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 8.3e-46 187.6 120 67.5
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.9e-45 186.4 165 51.5
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.4e-45 186.0 175 53.1
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.2e-45 185.7 165 51.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 4.1e-45 185.3 161 55.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.1e-45 185.3 122 67.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 7.0e-45 184.5 130 63.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-44 183.3 161 54.7
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-44 183.3 161 54.7
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-44 183.3 161 54.7
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-44 183.3 161 54.7
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-44 183.0 118 66.1
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-44 183.0 118 66.1
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.0e-44 183.0 161 56.5
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 3.5e-44 182.2 161 54.7
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.5e-44 182.2 123 67.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 4.6e-44 181.8 161 54.7
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.0e-44 181.4 177 54.2
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 7.8e-44 181.0 161 54.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 7.8e-44 181.0 161 54.0
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.8e-44 181.0 114 67.5
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-43 180.3 161 54.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.3e-43 180.3 161 54.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.3e-43 180.3 161 54.0
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.7e-43 179.9 197 44.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 5.0e-43 178.3 164 54.3
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 8.6e-43 177.6 178 53.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 5.6e-42 174.9 176 50.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 5.6e-42 174.9 167 50.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.6e-42 174.9 118 66.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 7.3e-42 174.5 138 55.8
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.6e-41 173.3 182 48.9
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-41 172.9 122 60.7
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.7e-41 171.8 127 59.8
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 8.1e-41 171.0 176 50.0
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 8.1e-41 171.0 117 62.4
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.1e-40 170.6 163 50.9
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.3e-40 169.5 122 59.8
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 3.1e-40 169.1 167 50.9
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 6.8e-40 167.9 166 53.0
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.5e-39 166.8 140 55.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 3.4e-39 165.6 169 47.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-39 165.2 114 62.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.9e-39 164.1 114 62.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.3e-38 163.7 120 64.2
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-38 162.9 114 58.8
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.9e-38 161.8 116 59.5
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.9e-37 159.8 185 45.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-34 150.6 114 57.9
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.5e-34 150.2 118 53.4
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 3.3e-34 149.1 177 40.7
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-33 146.7 109 56.0
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.2e-33 144.8 119 54.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.4e-32 143.7 153 45.1
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.4e-32 143.7 124 54.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.8e-32 143.3 125 52.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.8e-32 143.3 147 46.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 2.6e-31 139.4 127 50.4
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.6e-31 139.4 103 55.3
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 8.4e-30 134.4 98 59.2
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.9e-29 133.3 123 51.2
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.1e-28 129.8 109 56.0
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.7e-28 129.4 96 58.3
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.5e-28 129.0 122 47.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.0e-27 125.9 93 58.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.6e-26 121.7 84 60.7
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 7.3e-26 121.3 118 46.6
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-25 120.2 111 45.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.1e-25 119.8 110 52.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 6.2e-25 118.2 112 48.2
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-23 114.0 107 49.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-23 112.8 114 46.5
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-23 112.8 114 46.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 5.8e-23 111.7 117 42.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 9.9e-23 110.9 118 43.2
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.8e-22 109.0 121 44.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.2e-21 105.9 151 38.4
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 4.2e-21 105.5 117 44.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-20 103.2 78 53.8
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-19 100.5 73 60.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.6e-18 95.1 68 57.4
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 9.6e-18 94.4 123 47.2
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.1e-16 89.4 57 66.7
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 7.6e-15 84.7 140 35.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.6e-12 77.0 99 43.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 2.5e-10 69.7 45 64.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-09 67.4 42 69.0


User provided reference genes

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