Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 8.8e-308 1059.7 628 100.0
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 9.3e-249 863.6 685 76.9
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 4.1e-228 795.0 628 78.5
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.3e-223 779.2 638 77.3
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.1e-220 770.4 633 77.3
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 5.5e-217 758.1 631 76.5
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 9.7e-214 747.3 632 73.7
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 1.8e-212 743.0 635 74.0
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 5.3e-212 741.5 630 76.3
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.0e-210 737.3 636 72.8
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-210 736.9 636 73.0
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-209 733.4 636 72.5
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 2.5e-209 732.6 634 73.3
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 3.6e-208 728.8 633 72.0
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.0e-207 727.2 640 69.8
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.2e-206 723.8 634 74.9
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 8.2e-205 717.6 634 71.9
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 5.9e-195 684.9 544 74.8
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.3e-191 672.9 637 71.1
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.2e-190 670.6 634 68.5
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.0e-190 669.8 644 67.4
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 3.7e-189 665.6 630 71.0
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 4.9e-189 665.2 642 66.0
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.2e-187 660.6 636 64.5
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.0e-186 657.5 497 76.9
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.9e-186 656.0 635 66.6
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.2e-184 650.6 639 65.7
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 8.0e-184 647.9 633 64.9
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.4e-183 647.1 628 70.4
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.3e-183 646.4 632 62.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.4e-182 642.1 638 66.6
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 7.0e-180 634.8 640 65.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.2e-179 634.0 552 65.8
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.0e-179 633.3 634 64.8
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.0e-179 633.3 638 66.8
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.0e-179 633.3 641 67.7
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 6.0e-179 631.7 640 65.5
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.3e-178 630.6 518 71.8
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 4.3e-177 625.5 636 67.1
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 6.8e-175 618.2 632 60.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.3e-173 614.0 636 62.4
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.3e-173 614.0 638 62.4
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.3e-173 614.0 650 66.2
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 6.4e-173 611.7 529 66.7
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.2e-172 609.4 656 66.2
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.2e-171 607.4 568 66.7
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.1e-171 606.7 635 67.7
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 5.1e-170 602.1 634 64.5
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 5.1e-170 602.1 555 70.3
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 6.6e-170 601.7 636 66.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.1e-169 600.9 638 59.1
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.5e-169 600.5 639 61.3
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 4.7e-168 595.5 673 61.8
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 4.7e-168 595.5 643 62.8
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.4e-167 594.0 654 61.6
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.5e-166 590.5 628 65.3
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.0e-166 590.1 637 65.3
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 7.5e-166 588.2 635 64.4
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 9.9e-166 587.8 664 63.3
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.7e-165 587.0 642 58.7
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 4.6e-163 578.9 633 63.3
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.3e-162 577.4 560 62.0
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 5.1e-162 575.5 631 65.6
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 5.1e-162 575.5 635 66.0
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.1e-161 574.3 661 58.4
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.5e-161 573.9 578 65.7
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.1e-160 570.1 520 67.7
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.7e-160 568.9 576 64.1
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 4.7e-160 568.9 636 63.1
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 8.1e-160 568.2 431 73.1
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 8.1e-160 568.2 631 61.0
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 4.0e-159 565.8 583 61.7
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 5.2e-159 565.5 463 68.3
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.3e-157 560.8 688 57.4
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.3e-154 550.8 478 70.3
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.7e-154 550.4 539 67.7
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.2e-152 544.3 509 66.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 2.8e-152 543.1 667 54.0
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.7e-149 533.9 578 61.2
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.4e-148 530.8 659 59.0
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.9e-148 530.4 636 60.4
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 5.4e-148 528.9 570 61.9
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.3e-146 524.2 636 60.2
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 5.1e-146 522.3 558 56.5
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 6.6e-146 521.9 641 55.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 5.6e-145 518.8 546 59.0
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 3.6e-144 516.2 547 62.7
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 4.8e-144 515.8 528 59.7
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 2.6e-142 510.0 635 59.2
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 5.8e-142 508.8 695 52.7
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.9e-140 503.8 634 57.6
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.0e-138 498.0 635 58.1
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 9.6e-137 491.5 642 57.5
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.3e-136 491.1 369 77.8
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.8e-136 490.0 646 56.3
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 3.7e-136 489.6 635 57.5
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 4.8e-136 489.2 640 55.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 1.5e-134 484.2 629 50.7
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 3.8e-133 479.6 585 54.7
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.0e-130 469.9 351 71.2
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 3.9e-130 469.5 629 56.1
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 3.7e-128 463.0 648 54.5
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.2e-126 458.0 525 56.2
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-126 458.0 370 74.9
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.0e-126 457.2 599 54.3
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.4e-126 456.4 370 74.3
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.4e-126 456.4 370 74.3
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.6e-126 455.3 370 74.3
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.5e-121 441.0 638 53.3
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.3e-120 438.0 470 56.0
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 7.7e-118 428.7 541 55.8
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.3e-117 427.9 527 57.1
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 4.1e-111 406.4 641 49.3
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 9.4e-108 395.2 312 77.2
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.7e-99 366.3 473 54.1
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.6e-94 351.3 474 53.0
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 4.2e-92 343.2 343 56.0
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.7e-88 331.3 338 56.5
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.7e-88 331.3 355 53.0
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 4.2e-84 316.6 524 45.4
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 3.6e-75 287.0 385 46.0
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 1.0e-69 268.9 483 41.0
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 2.6e-65 254.2 399 42.1
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.6e-65 254.2 504 39.9
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.9e-61 240.4 540 40.0
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.5e-60 238.4 269 63.2
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 5.8e-57 226.5 312 45.2
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.5e-57 226.1 260 63.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 6.4e-56 223.0 332 44.6
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 5.8e-49 199.9 199 58.8
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.9e-48 197.6 134 80.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.5e-44 184.5 178 58.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 4.2e-39 167.2 103 78.6
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 8.7e-29 132.9 280 36.4
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 4.3e-28 130.6 357 32.5
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.2e-24 118.2 153 51.6
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.8e-24 117.5 410 33.4
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 2.1e-22 111.7 223 57.4
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.7e-22 111.3 91 59.3
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.3e-21 108.2 232 31.5
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 6.2e-19 100.1 151 68.9
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 9.0e-18 96.3 61 80.3
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 7.6e-17 93.2 138 61.6
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.2e-14 85.9 151 44.4
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 3.5e-14 84.3 58 67.2
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.1e-10 72.8 205 53.7
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 6.9e-10 70.1 41 80.5
Cpa.g.sc94.29 Carica papaya HOM05D004839 ORTHO05D006012 1.1e-07 62.8 37 78.4
Oeu047994.1 Olea europaea HOM05D004839 ORTHO05D290566 1.6e-06 58.9 115 36.5
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 3.5e-06 57.8 68 48.5
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.1e-06 57.0 39 69.2


User provided reference genes

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