Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.2e-269 930.2 479 100.0
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.1e-249 863.6 480 92.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.1e-237 825.5 479 87.3
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 3.4e-235 818.1 479 86.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 6.5e-234 813.9 479 86.4
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 9.3e-233 810.1 478 86.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.2e-232 809.7 479 85.4
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 7.9e-232 807.0 469 87.2
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.9e-231 804.7 479 85.2
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.5e-230 802.0 527 79.5
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.6e-229 799.3 479 83.7
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.8e-229 798.5 503 81.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.1e-228 795.0 479 83.5
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.0e-228 794.7 470 85.1
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.9e-228 793.9 479 83.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.5e-227 792.7 469 85.1
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 5.8e-227 790.8 479 84.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.6e-227 790.4 478 84.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.4e-225 786.2 480 83.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.4e-225 786.2 478 82.8
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.5e-225 784.3 480 83.1
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.1e-224 782.3 479 83.1
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 2.7e-224 781.9 478 82.6
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.3e-223 779.6 469 83.8
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.9e-222 775.8 497 80.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.5e-222 775.4 480 82.1
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-222 774.6 546 75.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 5.7e-222 774.2 479 81.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 7.4e-222 773.9 480 81.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.3e-221 773.1 476 81.9
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.2e-221 772.3 480 81.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.7e-221 771.5 479 81.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.8e-221 771.2 480 81.7
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.8e-221 771.2 469 82.9
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 8.2e-221 770.4 476 81.9
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.4e-220 769.6 469 82.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 2.4e-220 768.8 479 81.2
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.4e-220 768.8 477 81.3
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 5.3e-220 767.7 476 81.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.5e-219 766.1 476 81.5
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.5e-219 766.1 469 82.5
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.0e-219 765.8 477 81.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.4e-219 765.0 478 79.7
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 5.9e-219 764.2 476 80.5
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 5.9e-219 764.2 476 80.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.9e-219 764.2 478 81.0
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 7.7e-219 763.8 478 79.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.0e-218 763.5 476 80.9
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.0e-218 763.5 469 81.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.3e-218 763.1 478 81.6
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.3e-218 763.1 477 80.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-218 762.7 476 80.3
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.2e-218 762.3 481 81.1
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.9e-218 761.9 445 85.8
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.9e-218 761.9 478 80.1
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.8e-218 761.5 476 80.0
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.8e-218 761.5 479 79.5
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.0e-218 761.1 478 81.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 5.0e-218 761.1 474 80.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 5.0e-218 761.1 478 79.3
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.0e-218 761.1 474 81.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.0e-218 761.1 478 79.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 6.5e-218 760.8 478 79.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.1e-217 760.0 480 79.8
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.1e-217 760.0 474 80.6
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.1e-217 760.0 484 80.6
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-217 760.0 484 80.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-217 759.6 476 80.3
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-217 759.6 476 80.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.4e-217 759.6 476 80.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.9e-217 759.2 478 79.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 3.2e-217 758.4 480 80.0
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.2e-217 757.3 470 81.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 9.4e-217 756.9 471 80.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.1e-216 755.7 479 79.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 6.1e-216 754.2 476 80.0
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 6.1e-216 754.2 478 78.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.8e-215 752.7 470 80.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 3.0e-215 751.9 476 79.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.0e-215 751.9 477 80.1
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 3.9e-215 751.5 478 79.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.1e-215 751.1 480 80.2
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 6.7e-215 750.7 480 79.6
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 8.8e-215 750.4 476 79.8
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.8e-215 750.4 480 79.6
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.5e-214 748.8 480 79.6
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.3e-214 748.4 480 79.4
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.3e-214 748.4 480 78.3
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.4e-214 747.3 478 80.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.8e-213 745.3 494 76.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.9e-212 740.7 499 75.8
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.9e-210 735.3 478 75.9
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.8e-210 734.9 474 78.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-209 733.4 502 76.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 4.2e-209 731.5 475 77.5
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.1e-208 729.2 471 78.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.5e-206 723.0 536 70.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.0e-206 722.6 482 78.4
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 6.3e-205 717.6 426 84.3
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.8e-204 716.1 474 76.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.6e-203 712.2 446 81.8
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-201 706.1 477 74.6
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-200 703.4 477 74.2
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.3e-199 699.1 423 82.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.7e-199 697.6 473 75.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.4e-196 689.9 471 75.8
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.3e-196 688.0 471 75.8
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-194 683.7 427 80.8
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.3e-191 672.5 399 84.2
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.1e-188 662.1 474 69.8
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.5e-187 658.3 534 64.6
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.9e-185 652.9 518 68.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 8.3e-181 637.5 477 69.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.0e-176 620.9 479 67.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.0e-175 619.0 471 69.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.8e-175 617.8 382 80.4
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.6e-171 606.7 468 66.2
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.8e-167 593.2 373 79.9
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.1e-151 539.3 446 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.0e-150 536.6 474 59.3
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.9e-149 532.7 335 81.2
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.2e-144 517.3 474 56.5
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.0e-143 512.3 318 80.2
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.1e-140 501.5 382 68.6
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-128 463.8 288 83.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.8e-127 460.3 473 51.4
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.5e-116 422.2 314 67.2
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.3e-116 421.4 248 83.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-114 417.2 483 52.2
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.4e-111 406.8 351 59.8
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 6.5e-109 398.7 449 47.7
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-104 384.4 244 80.7
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-94 350.9 230 76.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.1e-83 313.9 325 55.1
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-75 288.1 211 70.6
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.1e-75 285.8 228 65.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.8e-74 282.0 181 79.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 9.1e-71 271.9 458 36.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 2.2e-64 250.8 539 33.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 9.2e-63 245.4 153 80.4
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.9e-61 240.4 153 81.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 4.7e-59 233.0 154 77.3
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.6e-49 200.7 195 59.0
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.6e-46 189.9 146 68.5
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.0e-45 187.2 108 84.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.8e-35 154.1 488 26.8
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.2e-34 149.8 96 77.1
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.4e-31 141.0 120 55.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.4e-23 113.2 66 81.8
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.1e-19 101.3 114 48.2
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 4.0e-18 97.1 490 25.5
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.6e-17 94.4 78 56.4
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 6.4e-16 89.7 49 85.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 3.2e-15 87.4 48 85.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.9e-12 78.2 71 50.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.6e-12 76.6 61 72.1
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 5.3e-10 70.1 53 71.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 5.3e-10 70.1 53 71.7
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.5e-09 68.6 44 72.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.9e-08 63.5 54 64.8
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 6.0e-06 56.6 43 62.8


User provided reference genes

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