Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1698.7 867 100.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1380.9 872 80.8
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1359.4 898 78.7
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1347.0 871 78.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1342.8 871 78.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1330.5 870 77.9
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1304.7 954 72.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1300.4 873 75.9
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1290.0 872 75.6
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1283.1 872 75.7
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1278.8 872 75.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 871 74.6
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1274.2 911 71.6
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1268.8 871 75.5
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1268.4 871 74.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1267.7 871 74.1
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1259.2 870 74.0
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1258.4 923 71.9
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1253.4 871 74.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1250.3 843 75.6
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1249.2 878 74.0
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1247.3 870 73.7
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1243.8 878 73.7
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1237.2 875 71.9
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1234.2 873 71.4
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1232.2 873 72.3
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1231.9 873 72.3
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1224.5 874 71.9
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1223.4 874 71.5
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1218.4 889 70.6
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1215.7 871 71.0
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1214.5 926 69.2
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1211.8 871 70.8
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1210.7 871 71.0
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1198.7 880 70.7
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1197.6 877 69.3
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1197.6 879 71.6
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1196.8 873 70.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1195.3 877 69.7
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1195.3 910 67.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1191.8 876 70.2
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1191.8 871 70.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1189.1 877 68.6
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1187.2 871 70.3
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1184.5 872 70.6
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1181.8 880 70.5
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1179.9 877 68.9
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1178.3 877 68.4
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1177.2 872 70.0
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1175.6 873 68.4
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1175.6 869 70.3
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1174.8 875 69.9
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1172.1 882 70.7
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1171.8 872 68.9
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1167.5 885 68.5
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1161.4 868 69.4
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1157.5 925 65.9
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1151.0 947 66.0
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1149.0 872 70.8
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1146.3 823 71.1
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1141.7 883 69.4
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1141.7 832 72.4
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1136.3 880 68.1
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1124.0 878 66.2
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1123.2 876 66.2
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1116.7 879 65.5
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1115.1 889 64.8
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1114.0 834 71.3
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1109.0 870 65.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1107.4 878 66.2
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1100.5 876 67.9
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1098.6 938 63.5
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1098.2 896 63.7
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 0.0e+00 1092.4 806 69.5
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1075.1 869 66.5
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.0e-309 1066.6 811 68.9
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 8.5e-301 1036.9 872 62.6
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.1e-292 1010.0 662 76.4
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 2.8e-280 968.8 872 62.2
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.8e-277 958.4 644 75.6
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 4.7e-275 951.4 691 70.3
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 8.0e-275 950.7 658 73.6
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 3.0e-274 948.7 689 70.2
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 2.0e-273 946.0 663 74.4
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.0e-266 923.7 766 63.6
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 3.6e-259 898.7 589 77.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.0e-257 892.9 920 52.1
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.6e-257 892.5 897 53.4
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-252 875.5 678 70.8
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-249 866.7 628 72.6
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.5e-249 866.7 871 54.5
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.1e-247 857.8 883 51.5
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 2.3e-245 852.8 590 73.7
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.4e-242 843.6 613 69.7
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 2.1e-235 819.7 851 53.3
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.7e-232 810.1 824 52.7
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.2e-225 787.3 866 49.9
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 1.5e-204 717.2 399 93.2
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.8e-195 686.4 496 70.8
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 4.6e-190 669.1 498 67.7
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.7e-187 659.4 448 74.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.2e-174 617.8 729 50.5
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.9e-168 596.7 444 69.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.1e-162 576.2 411 70.3
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.4e-156 556.6 757 43.1
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 4.1e-154 549.7 749 45.0
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.9e-135 487.6 390 65.1
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 9.5e-127 458.8 348 67.5
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-92 345.1 232 75.9
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 6.0e-89 333.2 376 44.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.9e-87 328.2 231 74.5
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 7.4e-71 273.1 227 60.8
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.2e-70 269.6 518 37.3
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-68 265.8 208 67.8
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 4.2e-66 257.3 313 48.9
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.0e-63 248.4 207 61.4
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.5e-60 237.7 170 70.0
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.0e-59 236.1 669 29.9
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-55 222.2 165 69.7
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 5.7e-55 220.3 309 42.4
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.7e-54 218.8 243 49.0
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.1e-53 216.1 273 47.3
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.2e-50 203.4 155 72.3
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 2.4e-45 188.3 299 43.1
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 9.1e-45 186.4 179 57.5
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-44 185.7 147 63.9
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.7e-41 174.1 151 58.3
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.0e-40 172.9 132 72.0
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 4.0e-40 171.0 684 26.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 5.2e-40 170.6 799 25.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.2e-40 170.6 693 26.0
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.0e-39 168.7 249 42.6
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.0e-39 168.7 139 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.4e-39 167.9 849 24.5
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.7e-38 164.5 708 24.6
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 4.1e-37 161.0 637 25.7
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.8e-33 148.3 158 48.7
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.7e-30 139.0 892 22.6
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 9.5e-26 123.2 114 60.5
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.8e-25 121.7 99 61.6
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.4e-24 119.4 756 25.3
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 2.3e-24 118.6 82 72.0
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-23 115.9 73 74.0
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 3.4e-23 114.8 449 23.4
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.3e-22 112.8 567 24.5
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 4.9e-22 110.9 127 48.0
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-22 110.5 345 26.7
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.4e-22 110.5 77 71.4
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.7e-20 105.1 105 45.7
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.3e-19 102.8 66 81.8
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.9e-19 101.3 260 29.2
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 3.6e-17 94.7 66 75.8
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.0e-16 91.3 66 69.7
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 4.1e-13 81.3 646 24.6
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.7e-12 78.6 218 29.8
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 7.8e-12 77.0 125 36.0
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 1.1e-08 66.6 42 69.0
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.2e-06 58.9 73 52.1


User provided reference genes

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