Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 3.0e-190 668.3 325 100.0
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 2.4e-155 552.4 317 84.9
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 1.0e-142 510.4 324 78.4
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 2.0e-133 479.6 325 74.5
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 1.7e-132 476.5 311 75.2
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 3.7e-132 475.3 311 75.6
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 2.4e-131 472.6 324 71.3
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 5.3e-131 471.5 316 74.7
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 7.0e-131 471.1 324 71.9
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 9.1e-131 470.7 313 74.1
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 3.5e-130 468.8 314 72.6
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 3.5e-130 468.8 307 73.9
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 3.5e-130 468.8 316 74.4
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 7.7e-130 467.6 329 72.6
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 2.2e-129 466.1 307 74.3
Lalb_Chr19g0138231 Lupinus albus HOM05D004419 ORTHO05D005480 2.2e-129 466.1 311 73.6
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.9e-129 465.7 324 72.2
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 3.8e-129 465.3 322 71.1
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 3.8e-129 465.3 309 73.5
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 5.0e-129 464.9 330 69.7
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 5.0e-129 464.9 324 70.7
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 5.0e-129 464.9 324 71.6
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 1.1e-128 463.8 324 71.3
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 4.2e-128 461.8 317 71.6
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 6.7e-126 454.5 313 72.8
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 1.1e-125 453.8 321 70.4
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 1.5e-125 453.4 318 71.1
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.6e-125 452.6 343 67.6
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 3.3e-125 452.2 313 70.9
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 5.7e-125 451.4 307 71.7
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 7.5e-125 451.1 310 70.6
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.5e-125 451.1 321 70.1
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 1.7e-124 449.9 311 71.1
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 3.7e-124 448.7 314 71.3
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 1.1e-123 447.2 311 71.7
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 1.1e-123 447.2 318 68.6
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.8e-123 446.4 324 68.8
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 3.1e-123 445.7 308 71.8
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 5.3e-123 444.9 325 68.3
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 2.0e-122 443.0 306 71.6
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 2.0e-122 443.0 311 70.7
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.7e-122 442.6 312 70.8
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 3.5e-122 442.2 353 65.4
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 4.5e-122 441.8 306 71.9
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 5.9e-122 441.4 315 68.6
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.3e-121 440.3 325 68.0
Thhalv10021129m.g Eutrema salsugineum HOM05D004419 ORTHO05D005480 5.0e-121 438.3 322 68.3
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 8.5e-121 437.6 325 67.4
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 8.5e-121 437.6 310 68.1
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 8.5e-121 437.6 348 64.9
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.1e-120 437.2 311 70.4
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 1.9e-120 436.4 312 67.3
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 2.5e-120 436.0 321 67.0
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 2.5e-120 436.0 314 70.1
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 5.5e-120 434.9 321 67.0
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 5.5e-120 434.9 321 67.0
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 2.3e-118 429.5 334 65.0
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 4.0e-118 428.7 322 65.5
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 2.0e-117 426.4 313 68.7
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 2.0e-117 426.4 313 68.7
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 3.4e-117 425.6 334 64.4
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 3.4e-117 425.6 309 67.6
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 9.8e-117 424.1 349 61.9
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 6.3e-116 421.4 332 66.0
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 7.0e-115 417.9 320 65.6
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 1.6e-114 416.8 319 66.1
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 3.5e-114 415.6 310 65.8
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 5.9e-114 414.8 330 62.1
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 7.7e-114 414.5 357 60.8
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 1.0e-113 414.1 327 63.3
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 1.1e-112 410.6 319 64.6
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 1.9e-112 409.8 309 64.4
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 3.2e-112 409.1 343 61.8
Sc16g0011690 Simmondsia chinensis HOM05D004419 ORTHO05D005480 9.4e-112 407.5 311 65.0
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 1.8e-110 403.3 324 63.9
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 2.0e-109 399.8 317 62.5
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 2.2e-108 396.4 310 64.8
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 2.8e-108 396.0 312 64.4
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 8.3e-108 394.4 322 62.4
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 1.6e-106 390.2 316 63.6
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 4.5e-106 388.7 328 58.2
Sabra01G0011400 Salix brachista HOM05D004419 ORTHO05D005480 8.6e-105 384.4 362 59.1
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 1.9e-104 383.3 332 60.8
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 3.6e-103 379.0 319 58.0
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 8.0e-103 377.9 314 59.6
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 1.0e-102 377.5 310 61.6
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.6e-101 372.9 312 59.0
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.4e-94 350.5 300 59.0
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.2e-93 347.4 323 54.5
ClCG03G013430 Citrullus lanatus HOM05D004419 ORTHO05D005480 1.2e-93 347.4 256 69.9
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 1.3e-89 334.0 261 66.3
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 1.5e-88 330.5 282 62.4
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 9.5e-88 327.8 281 60.5
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 4.7e-87 325.5 312 55.4
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 5.2e-86 322.0 312 52.6
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 5.2e-86 322.0 312 52.6
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 3.4e-85 319.3 312 52.9
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 6.4e-84 315.1 272 59.2
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 1.9e-83 313.5 276 60.5
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 8.6e-81 304.7 217 69.6
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 8.9e-78 294.7 362 45.6
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 3.8e-76 289.3 312 46.5
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 8.4e-76 288.1 313 49.2
QL01p016023 Quercus lobata HOM05D004419 ORTHO05D005480 3.2e-75 286.2 163 79.8
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 2.3e-73 280.0 303 47.5
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 4.3e-72 275.8 166 77.7
BcaC05g28277 Brassica carinata HOM05D004419 ORTHO05D005480 2.0e-69 266.9 273 53.1
CARHR096650 Cardamine hirsuta HOM05D004419 ORTHO05D005480 3.4e-69 266.2 218 63.3
Actinidia39384 Actinidia chinensis HOM05D004419 ORTHO05D005480 5.4e-59 232.3 123 86.2
MD11G1022000 Malus domestica HOM05D004419 ORTHO05D005480 1.6e-58 230.7 247 53.4
RcHm_v2.0_Chr5g0078291 Rosa chinensis HOM05D004419 ORTHO05D005480 2.7e-58 229.9 123 83.7
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 7.9e-58 228.4 223 54.7
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 4.0e-54 216.1 123 77.2
MELO3C025411.2 Cucumis melo HOM05D004419 ORTHO05D005480 2.4e-51 206.8 119 79.0
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 1.6e-47 194.1 144 59.7
SEGI_22299 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 3.1e-46 189.9 293 38.2
CARHR096660 Cardamine hirsuta HOM05D004419 ORTHO05D005480 6.5e-44 182.2 95 83.2
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 2.8e-39 166.8 175 46.3
SEGI_06744 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 5.5e-35 152.5 97 71.1
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 8.2e-31 138.7 214 37.9
PRCOL_00002632 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 9.4e-27 125.2 305 31.1
MBI01_g41296_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 7.9e-26 122.1 74 75.7
MD11G1022300 Malus domestica HOM05D004419 ORTHO05D005480 7.9e-26 122.1 96 62.5
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 2.6e-24 117.1 167 36.5
RcHm_v2.0_Chr5g0078281 Rosa chinensis HOM05D004419 ORTHO05D005480 8.2e-23 112.1 106 53.8
MCO11G675 Micromonas commoda HOM05D004419 ORTHO05D005480 5.3e-22 109.4 160 36.2
MCO01G020 Micromonas commoda HOM05D004419 ORTHO05D005480 6.9e-22 109.0 131 37.4
Actinidia06325 Actinidia chinensis HOM05D004419 ORTHO05D005480 4.5e-21 106.3 67 73.1
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 1.0e-20 105.1 144 36.8
MCO01G585 Micromonas commoda HOM05D004419 ORTHO05D005480 8.5e-20 102.1 363 25.3
FAN11G3211 Fragaria x ananassa HOM05D004419 ORTHO05D005480 3.2e-19 100.1 77 62.3
RcHm_v2.0_Chr5g0078191 Rosa chinensis HOM05D004419 ORTHO05D005480 1.2e-18 98.2 53 75.5
Ca_27145_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 1.6e-18 97.8 62 74.2
CAN.G103.12 Capsicum annuum HOM05D004419 ORTHO05D005480 1.0e-17 95.1 71 60.6
CAN.G1385.1 Capsicum annuum HOM05D004419 ORTHO05D005480 3.0e-17 93.6 83 55.4
MELO3C027435.2 Cucumis melo HOM05D004419 ORTHO05D005480 5.2e-17 92.8 55 72.7
Pp3c1_28300 Physcomitrium patens HOM05D004419 ORTHO05D005480 8.8e-17 92.0 112 43.8
Pp3c2_7150 Physcomitrium patens HOM05D004419 ORTHO05D005480 2.0e-16 90.9 135 38.5
Pp3c14_10900 Physcomitrium patens HOM05D004419 ORTHO05D005480 2.6e-16 90.5 140 39.3
vmacro19282 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 5.0e-12 76.3 73 52.1
HanXRQChr16g0505821 Helianthus annuus HOM05D004419 ORTHO05D005480 2.1e-10 70.9 45 64.4
MCO01G088 Micromonas commoda HOM05D004419 ORTHO05D005480 1.0e-09 68.6 181 28.2
MCO05G292 Micromonas commoda HOM05D004419 ORTHO05D005480 1.2e-08 65.1 66 51.5
DCAR_010505 Daucus carota HOM05D004419 ORTHO05D013449 2.0e-08 64.3 57 50.9
Actinidia06326 Actinidia chinensis HOM05D004419 ORTHO05D005480 7.5e-08 62.4 44 61.4
DCAR_013044 Daucus carota HOM05D004419 ORTHO05D005480 9.7e-08 62.0 30 83.3
DCAR_007794 Daucus carota HOM05D004419 ORTHO05D013449 1.3e-07 61.6 40 62.5
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.7e-07 61.2 59 52.5
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 2.8e-07 60.5 180 27.2
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 6.3e-07 59.3 180 27.2
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 8.2e-07 58.9 160 25.6
AagrBONN_evm.TU.Sc2ySwM_368.1680 Anthoceros agrestis HOM05D002457 ORTHO05D008732 1.1e-06 58.5 156 27.6
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 4.1e-06 56.6 146 26.7
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 9.1e-06 55.5 159 27.0


User provided reference genes

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