Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 0.0e+00 1179.5 571 100.0
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 0.0e+00 1093.2 571 91.4
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 0.0e+00 1084.3 571 91.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 0.0e+00 1081.2 571 90.4
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 0.0e+00 1080.1 571 90.7
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 0.0e+00 1079.7 571 90.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 7.8e-311 1069.7 566 90.3
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.7e-310 1068.5 566 89.9
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.0e-310 1067.8 574 89.9
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.6e-308 1062.0 558 90.9
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 4.7e-308 1060.4 555 90.5
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.4e-304 1048.9 565 88.7
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 4.1e-304 1047.3 566 88.2
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.1e-303 1045.0 559 90.3
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.5e-303 1044.3 563 88.1
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.1e-300 1035.0 554 88.3
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.8e-300 1034.6 571 86.3
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 2.3e-299 1031.6 561 88.1
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 5.2e-299 1030.4 567 86.1
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.5e-298 1028.9 571 87.2
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 6.4e-297 1023.5 555 87.7
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.4e-296 1022.3 555 87.2
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.2e-296 1021.1 561 87.9
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 5.4e-296 1020.4 534 90.6
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 9.2e-296 1019.6 566 86.0
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.7e-295 1018.1 566 86.4
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.5e-293 1011.5 558 86.6
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 2.5e-293 1011.5 561 85.6
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.5e-293 1009.6 554 86.5
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 4.7e-292 1007.3 591 82.2
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 4.7e-292 1007.3 571 83.5
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 6.2e-292 1006.9 558 84.8
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 5.2e-291 1003.8 571 83.4
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.5e-290 1002.3 558 84.8
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 9.9e-290 999.6 571 83.9
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 4.9e-289 997.3 555 84.7
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.4e-288 993.8 554 84.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 9.2e-288 993.0 571 82.7
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.6e-287 992.3 568 83.6
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 2.7e-287 991.5 567 83.1
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.5e-287 991.1 587 80.4
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.0e-286 989.6 523 89.1
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 2.3e-286 988.4 545 84.6
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 3.0e-286 988.0 571 81.8
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 5.1e-286 987.3 557 83.7
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 5.6e-285 983.8 603 78.3
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.8e-284 981.5 554 83.2
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 8.1e-284 979.9 570 81.1
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.1e-283 979.5 555 83.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 2.4e-283 978.4 579 82.7
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 9.9e-282 973.0 548 83.6
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.7e-281 972.2 570 80.5
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.9e-281 971.5 570 79.8
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 4.9e-281 970.7 573 82.0
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 2.4e-280 968.4 551 82.6
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 3.2e-280 968.0 562 81.3
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 2.1e-279 965.3 562 81.3
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 6.0e-279 963.8 557 81.5
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.3e-278 962.6 540 84.6
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.7e-278 962.2 555 82.9
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.7e-278 962.2 565 80.0
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.3e-278 961.8 551 81.7
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 2.3e-278 961.8 573 81.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.0e-278 961.4 567 81.5
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.0e-278 961.4 536 85.6
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 5.1e-278 960.7 556 82.4
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 9.6e-277 956.4 555 81.3
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.6e-276 955.7 592 79.7
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.6e-276 954.5 566 79.9
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 8.1e-276 953.4 572 79.0
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.4e-275 952.6 552 80.6
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 5.3e-275 950.7 552 80.6
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.4e-274 948.0 549 80.9
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.8e-274 947.2 562 79.0
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 2.4e-272 941.8 533 84.1
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 4.2e-272 941.0 554 80.3
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 9.3e-272 939.9 546 80.2
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 9.3e-272 939.9 550 79.6
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.6e-271 939.1 558 79.6
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 3.5e-271 937.9 517 85.7
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 4.6e-271 937.6 554 79.6
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 7.9e-271 936.8 556 79.5
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.3e-270 935.3 511 88.3
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 6.7e-270 933.7 561 77.9
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.5e-269 932.6 555 80.7
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 5.6e-269 930.6 554 78.2
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 5.6e-269 930.6 551 79.5
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.3e-268 929.5 549 81.1
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.1e-268 928.7 554 79.1
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.4e-267 925.2 566 78.1
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 9.0e-267 923.3 554 77.6
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.4e-266 921.4 535 80.4
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.8e-265 917.9 543 84.0
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 3.8e-265 917.9 567 78.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 6.4e-265 917.1 550 76.4
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 8.4e-265 916.8 551 78.9
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 2.1e-263 912.1 555 78.6
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.0e-262 909.8 555 78.2
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.0e-262 909.8 555 78.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.8e-262 909.1 555 78.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.3e-262 908.7 555 78.4
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 3.0e-262 908.3 549 79.8
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 3.9e-262 907.9 555 77.8
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 3.9e-262 907.9 551 78.0
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 5.1e-262 907.5 556 78.1
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 6.7e-262 907.1 560 77.1
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 6.7e-262 907.1 560 77.3
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 6.7e-262 907.1 560 77.1
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.3e-260 902.9 560 77.3
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.8e-260 901.7 549 77.4
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.8e-260 901.7 532 81.6
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.6e-252 875.9 518 79.9
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 8.2e-252 873.6 544 77.0
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.1e-251 873.2 551 77.5
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 7.2e-248 860.5 495 83.6
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.3e-246 855.5 555 74.4
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 7.4e-245 850.5 515 79.6
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 7.4e-245 850.5 551 75.7
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.7e-244 849.4 517 77.6
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 3.4e-242 841.6 550 76.4
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-236 822.4 567 72.0
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 3.7e-236 821.6 566 70.1
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.4e-227 793.1 554 69.3
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.4e-222 776.5 478 78.2
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 7.0e-203 711.1 584 61.6
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 2.0e-202 709.5 416 82.2
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.5e-202 708.8 602 61.0
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 4.5e-202 708.4 553 63.5
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 6.8e-198 694.5 581 60.8
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.9e-163 580.1 333 84.4
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.4e-150 536.6 319 81.8
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.7e-145 518.5 367 69.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.4e-139 500.7 278 82.7
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 6.7e-137 491.9 263 91.6
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 3.9e-129 466.1 317 72.6
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 5.3e-126 455.7 582 47.3
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.0e-116 422.5 294 72.1
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 9.4e-107 391.7 217 77.4
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.0e-105 388.3 293 63.5
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.1e-102 376.3 217 83.9
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.0e-100 371.7 272 66.9
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-89 333.6 227 74.0
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 1.3e-79 301.6 575 33.4
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.7e-76 291.2 201 71.1
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 2.3e-76 290.8 198 71.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.2e-66 258.5 145 77.2
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.3e-60 238.4 144 77.8
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 4.3e-59 233.4 457 31.1
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.4e-54 217.6 228 47.4
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.8e-40 169.9 123 61.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.3e-36 157.9 128 57.8
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 3.0e-36 157.5 109 67.9
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 4.8e-34 150.2 100 72.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.5e-32 145.2 173 46.8
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 7.6e-32 142.9 106 63.2
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 2.4e-25 121.3 131 51.9
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 8.5e-23 112.8 54 88.9
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.8e-18 97.1 56 78.6
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 8.5e-15 86.3 80 51.2
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 7.9e-13 79.7 43 86.0
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 6.5e-07 60.1 63 38.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 8.5e-07 59.7 70 35.7
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 1.4e-06 58.9 56 39.3
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 1.4e-06 58.9 77 29.9
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 1.4e-06 58.9 77 29.9
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 1.4e-06 58.9 56 39.3
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 2.5e-06 58.2 56 39.3
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.5e-06 58.2 56 39.3
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.5e-06 58.2 56 39.3
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 4.2e-06 57.4 76 30.3
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 7.2e-06 56.6 54 46.3
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 9.4e-06 56.2 55 32.7
PGSC0003DMG400001329 Solanum tuberosum HOM05D000082 ORTHO05D000038 9.4e-06 56.2 58 32.8


User provided reference genes

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