Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.6e-227 792.3 389 100.0
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.3e-168 596.7 390 75.1
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 8.5e-168 594.0 387 72.6
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.4e-165 586.6 391 74.2
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 1.4e-165 586.6 389 73.8
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 2.0e-161 572.8 395 72.4
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.2e-160 569.3 387 72.1
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.5e-159 566.6 389 72.2
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.2e-159 565.1 388 71.4
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 7.2e-159 564.3 393 71.0
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.7e-158 562.4 396 70.7
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 3.6e-158 562.0 395 69.6
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 4.7e-158 561.6 387 71.6
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.6e-156 555.8 395 69.1
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 4.4e-156 555.1 406 67.2
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.7e-156 554.7 395 69.1
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 5.7e-156 554.7 389 68.6
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.8e-155 552.4 392 69.4
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.4e-154 550.1 391 70.3
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 2.4e-154 549.3 458 62.9
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 5.4e-154 548.1 391 68.5
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.4e-154 548.1 410 67.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 7.0e-154 547.7 388 69.3
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.3e-152 543.5 388 68.0
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 6.6e-152 541.2 386 69.2
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.2e-150 537.0 393 67.2
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.6e-150 536.6 389 67.9
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.1e-150 536.2 387 66.9
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 8.0e-150 534.3 399 66.4
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 5.2e-149 531.6 391 66.8
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 6.8e-149 531.2 389 66.1
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 6.8e-149 531.2 391 66.0
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.5e-148 530.0 388 65.7
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 2.0e-148 529.6 391 65.7
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 4.4e-148 528.5 389 65.8
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 5.7e-148 528.1 386 66.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 9.8e-148 527.3 416 65.1
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.7e-147 526.6 427 62.8
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.7e-147 526.6 396 66.4
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 2.2e-147 526.2 389 66.6
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 6.3e-147 524.6 389 67.1
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 8.3e-147 524.2 388 67.8
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 8.3e-147 524.2 389 67.6
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.8e-146 523.1 384 66.4
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.8e-146 523.1 471 58.0
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.4e-146 522.7 404 64.1
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 2.4e-146 522.7 388 63.4
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.4e-146 521.5 422 62.6
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 9.2e-146 520.8 417 63.1
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 3.5e-145 518.8 389 66.1
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 4.5e-145 518.5 394 64.7
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 5.9e-145 518.1 390 66.2
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 1.0e-144 517.3 362 70.7
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.0e-144 517.3 389 64.0
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.3e-144 516.9 388 64.2
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 3.9e-144 515.4 388 63.9
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 8.6e-144 514.2 386 64.8
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 1.1e-143 513.8 389 64.3
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.5e-143 513.5 392 68.1
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 7.3e-143 511.1 387 64.9
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.2e-142 510.4 393 66.7
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 1.6e-142 510.0 389 64.5
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 2.1e-142 509.6 387 64.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.8e-142 509.2 356 70.5
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.0e-141 507.3 395 62.8
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 3.1e-141 505.8 390 64.1
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 8.9e-141 504.2 501 55.3
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.2e-140 503.8 388 63.7
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.2e-140 503.8 388 63.7
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.5e-140 503.4 391 66.2
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 1.1e-138 497.3 387 62.5
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 7.8e-137 491.1 386 63.5
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 2.8e-134 482.6 397 62.0
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.8e-133 479.9 378 63.8
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 8.3e-131 471.1 401 58.9
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 5.4e-130 468.4 389 59.9
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 1.0e-128 464.2 389 59.9
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 3.9e-128 462.2 368 62.0
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 9.5e-127 457.6 401 58.1
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.1e-125 454.1 385 55.1
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 4.0e-125 452.2 501 50.9
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 2.9e-123 446.0 386 55.7
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.9e-119 433.3 391 59.3
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 9.6e-119 431.0 387 53.5
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 1.6e-118 430.3 308 68.5
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.8e-117 426.8 381 58.5
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.6e-103 378.6 417 51.1
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 4.8e-102 375.6 333 56.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.2e-97 360.9 216 78.2
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 7.1e-90 335.1 282 59.9
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.3e-86 324.3 385 44.9
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.1e-85 321.2 294 56.5
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 1.6e-81 307.4 170 81.8
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 3.5e-81 306.2 218 66.5
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.8e-80 303.9 385 42.3
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 6.7e-80 302.0 385 42.9
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 3.4e-76 289.7 362 46.4
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.2e-74 282.7 419 44.6
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 7.2e-74 282.0 168 75.0
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.8e-72 277.3 242 57.4
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 8.8e-72 275.0 241 58.1
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.8e-64 250.8 141 79.4
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 5.1e-64 249.2 268 51.1
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 6.7e-64 248.8 146 74.7
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 2.1e-57 227.3 386 40.9
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 5.2e-56 222.6 384 40.4
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 1.7e-54 217.6 169 62.7
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 7.0e-53 212.2 121 81.8
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.9e-52 209.1 138 71.7
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 1.0e-51 208.4 563 28.4
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.1e-49 200.7 114 80.7
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 9.8e-47 191.8 129 63.6
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 1.4e-45 188.0 235 43.0
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.1e-42 178.3 253 42.3
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 9.4e-42 175.3 180 55.6
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 5.2e-40 169.5 269 37.9
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.5e-39 167.9 99 72.7
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 7.7e-36 155.6 432 29.2
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.2e-30 137.5 79 78.5
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.6e-28 131.3 217 39.2
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.6e-28 131.3 217 39.2
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.7e-27 127.9 169 43.2
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.7e-22 111.3 383 26.6
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 4.9e-22 109.8 457 26.5
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 8.3e-22 109.0 73 67.1
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 3.0e-19 100.5 54 85.2
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.1e-18 98.6 103 50.5
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.3e-18 97.1 428 24.1
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 4.7e-17 93.2 105 43.8
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.0e-16 90.1 58 65.5
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 3.6e-09 67.0 53 60.4
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 8.1e-09 65.9 40 62.5
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.1e-08 65.5 43 65.1
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 1.5e-07 61.6 27 88.9
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.2e-06 57.8 32 81.2
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 2.9e-06 57.4 31 64.5


User provided reference genes

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