Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 9.5e-116 420.2 220 100.0
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.7e-104 382.9 220 92.3
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 2.9e-104 382.1 220 90.9
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 4.9e-104 381.3 220 91.4
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.6e-102 374.8 220 90.0
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.6e-102 374.8 220 90.5
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 7.8e-102 374.0 219 89.0
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.7e-101 372.9 220 89.1
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.9e-101 371.7 220 86.4
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.9e-101 371.7 220 89.1
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.6e-101 370.9 220 88.6
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 6.6e-101 370.9 220 88.6
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 8.7e-101 370.5 220 90.0
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 87.6
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.5e-100 369.8 220 86.4
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.9e-100 369.4 220 85.5
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-100 369.0 220 87.7
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-100 369.0 220 87.7
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-100 369.0 220 87.7
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-100 369.0 220 87.7
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 2.5e-100 369.0 220 89.1
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.3e-100 368.6 220 87.7
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 5.6e-100 367.9 220 86.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 5.6e-100 367.9 217 86.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 5.6e-100 367.9 220 86.4
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 7.3e-100 367.5 219 87.7
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 9.6e-100 367.1 220 85.5
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.3e-99 366.7 220 85.0
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 2.1e-99 365.9 220 85.9
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.1e-99 365.9 219 87.2
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.8e-99 365.5 220 85.0
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 2.8e-99 365.5 213 88.3
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 3.6e-99 365.2 220 87.3
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 8.1e-99 364.0 220 86.8
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.4e-98 363.2 219 84.5
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.8e-98 362.8 220 86.8
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.8e-98 362.8 220 83.6
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.4e-98 362.5 220 83.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.4e-98 362.5 220 83.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 2.4e-98 362.5 220 84.5
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.1e-98 362.1 220 86.8
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 5.3e-98 361.3 220 83.6
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 1.2e-97 360.1 220 86.4
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.2e-97 360.1 220 84.5
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.5e-97 359.8 220 85.9
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.6e-97 359.0 217 83.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.6e-97 359.0 220 83.6
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 2.6e-97 359.0 220 83.6
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 4.4e-97 358.2 220 85.0
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 4.4e-97 358.2 220 83.6
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 5.8e-97 357.8 220 85.9
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 5.8e-97 357.8 220 85.0
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.7e-96 356.3 220 85.0
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.7e-96 356.3 220 84.5
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 4.9e-96 354.8 220 84.5
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 4.9e-96 354.8 217 83.4
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 4.9e-96 354.8 217 83.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.4e-96 354.4 211 89.1
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 8.4e-96 354.0 220 82.3
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.1e-95 353.6 213 85.0
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 82.9
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.4e-95 353.2 220 84.1
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 3.2e-95 352.1 209 89.0
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 4.2e-95 351.7 220 84.1
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 5.4e-95 351.3 220 82.3
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 7.1e-95 350.9 219 82.6
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 7.1e-95 350.9 220 86.8
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.1e-94 349.4 219 82.2
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 3.5e-94 348.6 220 83.2
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.3e-93 346.7 213 82.2
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.7e-93 346.3 216 81.5
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.3e-93 345.9 221 79.6
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 8.7e-93 344.0 225 79.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 1.9e-92 342.8 221 82.8
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 3.3e-92 342.0 221 82.8
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 3.3e-92 342.0 221 82.8
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 4.3e-92 341.7 221 82.8
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 4.3e-92 341.7 221 82.8
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 5.6e-92 341.3 222 80.6
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 7.4e-92 340.9 223 80.7
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 7.4e-92 340.9 208 84.1
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 9.6e-92 340.5 220 79.5
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 3.6e-91 338.6 221 82.4
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 3.6e-91 338.6 209 82.3
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 8.1e-91 337.4 209 83.3
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.4e-90 336.7 296 64.9
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.4e-90 336.7 204 83.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.8e-90 336.3 208 85.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.1e-90 335.5 220 78.2
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.1e-90 335.5 204 82.4
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 9.0e-90 334.0 213 83.6
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 2.6e-89 332.4 209 82.3
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 7.6e-89 330.9 220 76.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 3.8e-88 328.6 217 79.7
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.2e-86 323.6 220 75.9
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 2.7e-86 322.4 220 77.7
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.0e-85 320.5 217 78.8
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 2.3e-85 319.3 220 74.5
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 5.1e-85 318.2 279 62.7
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 6.7e-85 317.8 198 83.3
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 6.7e-85 317.8 220 75.5
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 5.6e-84 314.7 217 75.1
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.3e-83 313.5 213 72.3
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.6e-83 313.2 217 74.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.1e-83 312.8 203 75.9
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-82 310.5 217 74.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 7.9e-78 294.3 203 76.8
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.0e-77 293.9 187 80.7
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 3.3e-76 288.9 187 82.9
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.8e-75 285.0 176 83.5
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.3e-72 276.9 175 82.3
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.7e-72 276.6 166 83.1
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 2.5e-68 262.7 221 58.4
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 3.7e-67 258.8 212 62.7
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.4e-66 256.9 220 68.6
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.5e-65 251.9 212 60.8
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 2.0e-60 236.5 147 83.7
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 6.9e-58 228.0 212 56.6
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.5e-57 226.9 141 81.6
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 2.2e-56 223.0 147 80.3
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.7e-54 216.1 214 57.9
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 5.7e-52 208.4 178 65.7
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.3e-51 207.2 150 77.3
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 2.2e-48 196.4 128 78.9
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 7.2e-47 191.4 110 83.6
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-46 190.7 217 52.1
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 8.5e-40 167.9 164 54.3
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 8.5e-40 167.9 176 54.5
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.7e-33 146.4 219 46.6
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 3.2e-31 139.4 93 80.6
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 2.8e-30 136.3 86 83.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 3.1e-26 122.9 94 78.7
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 4.1e-18 95.9 56 80.4
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 6.6e-16 88.6 45 88.9
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.5e-15 87.4 46 89.1
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 6.2e-14 82.0 66 66.7
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 8.9e-13 78.2 53 67.9
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.2e-11 73.6 98 43.9
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 4.3e-07 59.3 34 82.4
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 1.2e-06 57.8 34 82.4
Lj4A782T80 Lonicera japonica HOM05D005338 ORTHO05D234559 3.6e-06 56.2 59 66.1


User provided reference genes

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