Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 0.0e+00 1143.6 777 100.0
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 8.9e-225 784.3 783 74.7
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.3e-223 780.4 783 70.2
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 4.4e-216 755.4 780 69.1
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.2e-214 749.2 783 75.4
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 4.9e-207 725.3 774 69.3
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.1e-205 719.9 780 66.8
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 2.1e-202 709.9 777 67.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.1e-202 708.0 773 72.7
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 3.4e-200 702.6 779 64.3
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.9e-198 696.8 785 65.9
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 5.4e-198 695.3 781 70.9
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 3.0e-196 689.5 782 67.6
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 8.7e-196 688.0 782 63.3
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 4.3e-195 685.6 788 65.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.6e-194 683.7 776 67.9
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 3.1e-193 679.5 779 67.7
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.9e-191 672.2 776 63.7
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-190 671.0 777 65.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-190 671.0 784 66.3
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.2e-189 667.5 775 66.6
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 4.6e-189 665.6 780 54.6
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 6.0e-189 665.2 780 61.4
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.3e-188 664.1 781 64.7
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 3.3e-187 659.4 779 66.5
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.5e-184 650.6 779 61.4
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 9.9e-184 647.9 779 63.9
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.9e-182 643.7 782 63.0
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 9.3e-182 641.3 786 63.5
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.6e-181 640.6 780 66.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.7e-181 639.8 782 62.9
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 2.3e-180 636.7 788 63.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.1e-179 634.4 780 64.9
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.1e-178 630.2 799 59.1
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.4e-177 626.7 788 62.2
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.0e-177 625.9 780 60.4
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 9.0e-177 624.8 806 61.3
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-176 624.0 786 67.0
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.6e-176 623.2 785 63.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 5.8e-176 622.1 779 61.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 7.6e-176 621.7 780 64.1
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 7.6e-176 621.7 779 61.6
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-175 620.9 788 59.8
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.7e-175 620.5 783 62.1
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 2.2e-175 620.2 792 63.8
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.9e-175 619.8 787 64.2
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.8e-175 619.4 780 64.0
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.0e-172 609.8 782 61.6
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 5.1e-172 609.0 783 59.4
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.7e-172 608.2 782 59.2
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.5e-171 607.4 779 62.9
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 5.7e-171 605.5 787 62.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 6.2e-170 602.1 781 57.7
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 3.4e-168 596.3 786 60.7
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 5.0e-167 592.4 784 60.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 1.2e-165 587.8 775 59.9
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.2e-165 587.8 790 55.3
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.0e-164 584.7 812 59.2
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 3.0e-164 583.2 780 55.6
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.9e-163 580.5 781 58.3
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 3.3e-163 579.7 794 61.7
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.3e-163 579.3 780 60.3
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.1e-161 573.2 779 59.4
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 5.3e-161 572.4 807 55.6
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 3.4e-160 569.7 786 53.8
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 4.5e-160 569.3 785 58.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.5e-158 563.5 785 55.3
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 7.2e-158 562.0 802 60.3
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 9.4e-158 561.6 800 57.9
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 7.4e-155 552.0 782 60.7
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 6.3e-154 548.9 796 60.6
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 3.1e-153 546.6 756 57.8
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 4.1e-153 546.2 794 55.5
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 2.0e-152 543.9 790 55.9
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.2e-150 536.2 762 51.2
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 4.2e-150 536.2 698 60.3
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 8.8e-148 528.5 769 54.7
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 8.8e-148 528.5 781 57.6
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 2.0e-147 527.3 788 52.3
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.6e-147 526.9 790 52.9
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.3e-146 524.6 794 49.2
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.8e-146 523.5 841 54.3
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.4e-145 521.2 785 57.3
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.5e-142 511.1 749 50.7
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.7e-141 506.9 779 55.2
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.6e-141 506.5 781 56.5
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 6.1e-141 505.8 791 56.9
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 9.7e-139 498.4 786 54.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.1e-137 495.0 791 54.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.2e-136 491.5 797 53.1
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.0e-135 488.4 782 51.9
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.3e-135 488.0 778 56.9
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 3.8e-135 486.5 794 55.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.5e-134 484.6 806 55.8
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.5e-134 484.6 754 56.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.2e-134 483.4 758 57.0
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.2e-133 481.5 785 57.1
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 8.0e-133 478.8 793 48.8
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 4.0e-132 476.5 771 52.7
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 4.0e-132 476.5 771 52.7
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 4.0e-132 476.5 771 52.7
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.3e-130 471.5 783 53.4
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 2.8e-130 470.3 783 53.3
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.8e-130 470.3 780 56.8
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 5.4e-129 466.1 775 52.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 3.5e-128 463.4 775 56.1
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 5.9e-128 462.6 781 51.7
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 8.5e-127 458.8 803 53.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.0e-124 451.8 780 51.8
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 5.2e-124 449.5 790 48.6
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 9.8e-123 445.3 746 55.1
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.2e-122 444.1 789 53.4
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 5.0e-119 433.0 721 46.3
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.3e-111 407.5 786 49.2
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 5.0e-103 379.8 786 48.7
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.3e-98 365.2 281 70.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.5e-94 351.7 815 47.0
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 9.5e-94 349.0 832 44.5
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 2.8e-93 347.4 739 48.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 6.8e-92 342.8 699 46.4
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.2e-91 342.0 330 62.4
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.9e-87 327.0 813 44.9
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 7.3e-86 322.8 588 53.1
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.1e-81 308.9 557 58.2
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 5.6e-70 270.0 232 70.7
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.8e-69 266.9 232 69.8
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 8.4e-66 256.1 220 64.5
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.6e-59 233.0 775 38.5
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 4.6e-56 223.8 240 57.1
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.3e-53 215.7 176 71.6
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 3.4e-51 207.6 159 68.6
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.7e-50 205.3 302 47.0
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.3e-46 191.0 303 47.9
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-45 188.3 308 43.2
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.1e-41 176.0 126 77.0
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.6e-27 128.3 71 88.7
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.1e-25 122.9 152 53.3
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 2.7e-24 118.2 73 82.2
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 5.9e-19 100.5 130 46.9
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 8.8e-15 86.7 104 40.4
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 8.8e-15 86.7 114 48.2
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 4.1e-12 77.8 127 40.2
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 5.4e-12 77.4 126 40.5
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.6e-11 75.9 146 33.6
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.7e-08 65.1 190 30.5
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.3e-07 62.0 61 60.7
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.0e-07 61.6 114 42.1
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 6.8e-07 60.5 258 32.2
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 8.8e-07 60.1 258 32.2
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 8.8e-07 60.1 258 32.2
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.5e-06 57.0 54 66.7


User provided reference genes

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