Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 0.0e+00 1109.0 664 100.0
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.5e-292 1009.2 631 86.7
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 4.2e-268 927.9 629 79.7
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 2.4e-263 912.1 629 78.5
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 6.1e-259 897.5 635 76.9
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 8.0e-259 897.1 632 77.2
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 7.5e-257 890.6 634 76.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.2e-256 889.0 632 76.4
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.7e-256 888.3 633 79.3
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.6e-251 871.7 634 78.4
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.5e-249 866.3 634 77.1
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 3.7e-248 861.7 634 76.3
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.1e-246 855.9 633 72.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.0e-246 854.4 634 76.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.0e-245 853.6 611 78.4
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.7e-245 852.8 634 72.9
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.1e-245 851.3 634 76.3
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 7.3e-244 847.4 634 76.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 2.1e-243 845.9 633 72.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.4e-242 843.2 634 76.5
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 5.8e-241 837.8 634 76.3
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.8e-241 837.8 636 71.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.9e-241 837.0 636 71.5
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 5.4e-239 831.2 631 74.0
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 7.1e-239 830.9 645 71.3
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 4.6e-238 828.2 634 71.1
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.3e-237 826.6 612 76.1
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.3e-237 826.6 633 73.6
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 3.0e-237 825.5 633 70.5
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.1e-237 824.7 631 71.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 2.5e-236 822.4 657 71.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 9.6e-236 820.5 634 70.3
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.6e-235 819.7 669 72.3
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-234 817.0 634 72.6
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 4.0e-234 815.1 634 74.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.9e-234 813.9 635 71.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.5e-233 813.1 636 72.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-233 812.8 633 73.0
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.4e-233 812.0 663 70.4
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 4.4e-233 811.6 633 70.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 5.8e-233 811.2 634 73.7
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.7e-232 809.7 625 70.9
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.7e-232 809.7 634 72.4
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 8.4e-232 807.4 634 72.1
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-230 803.5 636 69.8
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.1e-230 802.7 634 69.2
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 4.6e-230 801.6 633 69.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 4.6e-230 801.6 635 70.2
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.3e-229 800.0 634 69.4
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.3e-229 800.0 636 68.9
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 3.9e-229 798.5 635 72.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 5.1e-229 798.1 674 68.8
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 5.6e-228 794.7 634 68.8
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-227 793.1 635 71.7
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.8e-226 789.6 625 69.0
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.1e-226 788.9 703 64.0
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.6e-225 785.8 632 68.7
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 4.4e-225 785.0 683 67.8
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-224 783.1 633 67.9
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-224 783.1 633 67.9
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.7e-224 783.1 633 67.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.2e-224 782.7 634 69.4
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-223 780.4 633 71.1
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 7.1e-223 777.7 717 65.1
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.0e-222 774.6 632 67.6
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 7.9e-222 774.2 644 66.3
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.0e-221 773.9 635 67.6
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.3e-221 773.5 635 66.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.3e-221 773.5 633 67.9
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.7e-221 773.1 644 67.7
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 5.1e-221 771.5 627 68.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 8.7e-221 770.8 634 68.3
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.1e-220 770.4 636 66.5
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 7.3e-220 767.7 634 72.9
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 3.6e-219 765.4 663 65.9
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-218 763.8 634 66.9
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.2e-217 760.4 670 67.6
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-217 760.4 670 67.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.6e-217 759.2 636 66.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.4e-217 758.8 631 69.4
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.6e-217 757.7 670 67.3
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 7.6e-217 757.7 625 67.2
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.7e-216 756.5 634 66.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 3.8e-216 755.4 623 67.9
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.8e-216 755.4 669 67.6
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.8e-216 755.4 669 67.6
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.1e-214 749.6 630 69.7
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-214 749.6 648 67.9
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 4.6e-214 748.4 635 65.2
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 6.0e-214 748.0 670 66.9
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 7.9e-214 747.7 622 66.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.0e-213 747.3 629 68.4
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.5e-212 743.4 636 64.9
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 4.0e-210 735.3 641 68.5
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 3.2e-207 725.7 552 68.5
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 4.2e-207 725.3 665 63.6
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.2e-206 723.8 637 65.0
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 4.6e-206 721.8 604 67.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 3.7e-203 712.2 560 71.4
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.2e-203 711.4 630 65.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.4e-201 705.7 536 72.2
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.0e-200 704.1 643 61.6
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.9e-199 699.9 636 64.9
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.2e-198 697.2 526 70.7
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 4.6e-198 695.3 635 63.3
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 8.7e-197 691.0 638 61.9
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.4e-196 688.0 633 62.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 4.2e-191 672.2 513 76.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 3.7e-187 659.1 632 60.0
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 3.2e-183 646.0 632 59.2
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 7.2e-183 644.8 632 57.8
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.8e-179 632.9 618 59.5
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 4.8e-179 632.1 512 72.1
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.1e-174 616.7 638 56.6
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 6.1e-174 615.1 506 70.9
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.5e-169 599.0 481 67.8
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.1e-167 594.3 506 65.4
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 6.1e-158 562.0 423 77.8
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.8e-157 560.5 623 53.0
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 6.3e-155 552.0 416 77.9
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 3.6e-150 536.2 630 53.2
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-143 514.2 452 63.1
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.8e-142 510.0 626 47.0
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 4.3e-135 486.1 458 60.5
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 6.2e-134 482.3 411 66.7
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.8e-133 480.7 648 43.7
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 3.1e-133 479.9 517 53.4
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-124 450.7 332 76.8
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-122 444.5 388 63.4
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 8.7e-112 408.7 587 44.3
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 4.5e-108 396.4 421 54.4
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 2.4e-106 390.6 653 41.0
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.1e-102 375.6 297 69.7
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.8e-86 323.2 315 62.9
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.0e-72 278.9 212 70.3
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 4.8e-70 270.0 210 67.1
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 7.2e-66 256.1 639 32.7
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.2e-65 255.4 224 59.8
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.8e-61 241.5 329 48.9
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.2e-60 238.8 212 59.4
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.7e-59 235.0 170 77.6
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.4e-58 229.2 168 70.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.8e-56 222.6 186 65.1
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 5.7e-55 219.9 720 30.8
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.8e-54 217.6 179 64.8
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.2e-51 208.0 179 62.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 8.5e-51 206.1 155 67.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.5e-50 204.5 155 67.1
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.1e-49 199.9 164 70.7
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.7e-43 181.8 127 75.6
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.2e-43 181.4 151 66.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.5e-42 178.7 653 29.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 3.0e-40 171.0 117 76.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.3e-38 163.3 148 62.2
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.2e-37 159.5 136 69.1
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.1e-33 148.3 189 47.1
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.6e-28 132.1 111 60.4
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-28 131.7 92 72.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-28 131.7 92 72.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-28 131.7 92 72.8
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 5.9e-28 130.2 92 72.8
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.3e-27 129.0 150 52.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 7.3e-26 123.2 94 69.1
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.3e-24 118.2 96 66.7
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.1e-24 117.9 97 62.9
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.0e-23 115.2 94 63.8
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.7e-19 102.1 91 62.6
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.1e-16 92.8 93 54.8
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.8e-15 87.0 118 47.5
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 7.5e-15 86.7 86 50.0
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 9.9e-15 86.3 60 73.3
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 4.9e-14 84.0 58 72.4
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.9e-14 84.0 58 72.4
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.9e-13 82.0 50 74.0
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 3.2e-13 81.3 58 69.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.1e-13 80.9 82 48.8
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.3e-10 70.9 626 22.8
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 5.6e-10 70.5 48 77.1
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 3.1e-08 64.7 49 63.3
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.2e-07 62.8 47 61.7
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 5.8e-07 60.5 95 42.1
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 9.9e-07 59.7 37 73.0
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 1.3e-06 59.3 50 58.0


User provided reference genes

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