Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 3.7e-193 677.9 322 100.0
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 5.3e-147 524.6 319 75.9
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 1.5e-146 523.1 320 78.8
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 2.0e-146 522.7 320 78.4
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 1.3e-145 520.0 319 77.1
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 1.6e-143 513.1 319 76.5
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 3.5e-143 511.9 321 77.3
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 5.1e-142 508.1 319 75.5
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 7.3e-141 504.2 319 77.1
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 1.6e-140 503.1 319 76.5
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 2.1e-140 502.7 319 74.6
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 2.8e-140 502.3 319 74.9
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 2.8e-140 502.3 319 76.2
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 3.6e-140 501.9 319 75.5
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 5.3e-139 498.0 319 74.6
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 5.3e-139 498.0 319 75.5
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 9.0e-139 497.3 319 73.7
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 9.0e-139 497.3 319 74.9
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.7e-137 493.0 319 73.4
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.7e-137 493.0 319 73.4
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 1.1e-136 490.3 321 75.1
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 1.9e-136 489.6 319 74.3
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 4.2e-136 488.4 319 74.6
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 7.1e-136 487.6 319 74.6
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 2.1e-135 486.1 319 74.0
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 1.3e-134 483.4 319 73.0
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 3.0e-134 482.3 319 73.7
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 3.0e-134 482.3 320 73.1
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 8.7e-134 480.7 319 71.8
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 1.9e-133 479.6 319 72.7
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 9.6e-133 477.2 319 71.8
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.6e-132 476.5 319 71.5
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 4.0e-131 471.9 319 71.8
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 6.9e-131 471.1 321 68.8
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 3.2e-128 462.2 320 70.0
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 3.5e-127 458.8 319 69.9
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 5.1e-126 454.9 319 68.3
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 1.9e-125 453.0 319 69.6
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 1.9e-125 453.0 310 71.6
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 4.3e-125 451.8 319 67.1
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 9.6e-125 450.7 307 68.4
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 2.1e-124 449.5 319 66.8
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 2.8e-124 449.1 371 60.9
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 2.8e-124 449.1 319 66.8
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 3.7e-124 448.7 319 67.4
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 3.7e-124 448.7 321 68.8
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 4.8e-124 448.4 319 66.8
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 6.3e-124 448.0 322 68.6
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 6.3e-124 448.0 319 66.8
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 2.4e-123 446.0 320 68.8
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 3.1e-123 445.7 306 69.0
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 1.2e-122 443.7 320 67.8
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 1.5e-122 443.4 319 68.7
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 2.0e-122 443.0 321 69.2
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 2.6e-122 442.6 307 69.1
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 5.8e-122 441.4 321 67.9
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 1.3e-121 440.3 319 67.7
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 3.8e-121 438.7 320 69.4
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 3.8e-121 438.7 322 68.6
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 5.0e-121 438.3 319 67.7
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 8.4e-121 437.6 319 67.4
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 1.1e-120 437.2 321 67.9
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 1.1e-120 437.2 321 67.9
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 1.9e-120 436.4 319 66.1
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 2.5e-120 436.0 321 66.7
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 7.2e-120 434.5 320 69.1
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 7.2e-120 434.5 320 67.5
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 9.3e-120 434.1 323 67.5
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 1.2e-119 433.7 320 67.8
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 2.7e-119 432.6 319 67.1
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 2.7e-119 432.6 321 66.0
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 3.5e-119 432.2 319 66.8
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 3.5e-119 432.2 307 68.7
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 4.6e-119 431.8 319 67.4
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 1.0e-118 430.6 320 67.5
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 2.3e-118 429.5 321 65.7
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 3.0e-118 429.1 323 67.5
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 6.7e-118 427.9 324 66.4
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 1.9e-117 426.4 306 69.3
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 2.5e-117 426.0 320 66.2
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 5.7e-117 424.9 344 62.5
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 9.7e-117 424.1 308 67.9
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 4.8e-116 421.8 319 66.1
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 1.8e-115 419.9 320 67.5
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 5.3e-115 418.3 321 63.2
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 1.9e-112 409.8 321 64.2
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 3.2e-112 409.1 369 59.6
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 4.6e-111 405.2 328 64.3
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 1.4e-104 383.6 281 66.9
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 3.2e-104 382.5 329 60.5
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 1.8e-102 376.7 258 73.3
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 3.0e-102 375.9 262 70.6
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 4.4e-101 372.1 239 75.7
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 1.7e-100 370.2 284 65.5
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 2.5e-96 356.3 326 57.7
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 1.4e-91 340.5 210 78.1
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 1.6e-87 327.0 311 58.8
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 1.2e-85 320.9 256 62.1
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 1.2e-85 320.9 256 62.1
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 6.5e-81 305.1 313 51.4
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 1.6e-79 300.4 352 47.2
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 1.2e-77 294.3 310 51.0
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 1.5e-77 293.9 372 47.6
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 6.6e-73 278.5 167 77.2
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 7.3e-64 248.4 198 62.6
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 2.0e-58 230.3 126 84.9
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.3e-57 227.6 126 83.3
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 1.3e-52 211.1 117 81.2
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 1.6e-42 177.6 143 58.0
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 1.7e-41 174.1 88 88.6
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 9.6e-32 141.7 186 37.6
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.9e-27 127.5 97 64.9
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 5.4e-27 125.9 90 64.4
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 2.1e-26 124.0 90 63.3
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 7.4e-24 115.5 54 96.3
Rhsim12G0100100 Rhododendron simsii HOM05D006443 ORTHO05D007797 2.8e-23 113.6 103 54.4
FAN12G3107 Fragaria x ananassa HOM05D006443 ORTHO05D007797 2.0e-21 107.5 90 58.9
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 3.4e-21 106.7 141 41.1
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 8.4e-20 102.1 73 56.2
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 5.6e-16 89.4 142 38.0
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 2.8e-15 87.0 50 80.0
TAR629G0787 Trochodendron aralioides HOM05D006443 ORTHO05D007797 4.8e-15 86.3 76 61.8
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 1.7e-12 77.8 55 61.8
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 1.7e-12 77.8 55 61.8
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 1.3e-09 68.2 150 32.0
VMungo0331G1094 Vigna mungo HOM05D003341 ORTHO05D003603 1.8e-09 67.8 228 26.8
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 3.0e-09 67.0 150 32.0
A05p35310 Brassica napus HOM05D003341 ORTHO05D003603 6.7e-09 65.9 168 29.2
BraA05t22341Z Brassica rapa HOM05D003341 ORTHO05D003603 6.7e-09 65.9 168 29.2
Cfa003500 Carpinus fangiana HOM05D003341 ORTHO05D003603 6.7e-09 65.9 147 30.6
Migut.J00071 Erythranthe guttata HOM05D003341 ORTHO05D003603 6.7e-09 65.9 151 30.5
Psat5g189880 Pisum sativum HOM05D003341 ORTHO05D003603 6.7e-09 65.9 110 36.4
Gohir.D10G118300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 1.5e-08 64.7 147 31.3
Gorai.011G130100 Gossypium raimondii HOM05D003341 ORTHO05D003603 1.5e-08 64.7 147 31.3
Thecc.04G156400 Theobroma cacao HOM05D003341 ORTHO05D003603 1.5e-08 64.7 147 30.6
MSTRG.5521 Avicennia marina HOM05D003341 ORTHO05D003603 5.7e-08 62.8 149 28.2
Sed0009033 Sechium edule HOM05D003341 ORTHO05D003603 5.7e-08 62.8 147 32.0
CARHR089000 Cardamine hirsuta HOM05D003341 ORTHO05D003603 7.4e-08 62.4 106 35.8
Ciclev10012606m.g Citrus clementina HOM05D003341 ORTHO05D003603 7.4e-08 62.4 147 29.9
VMungo0720G1619 Vigna mungo HOM05D003341 ORTHO05D003603 7.4e-08 62.4 150 29.3
arahy.Tifrunner.gnm1.ann1.8PX6PB Arachis hypogaea HOM05D003341 ORTHO05D003603 1.3e-07 61.6 106 33.0
COL.COLO4_36103 Corchorus olitorius HOM05D003341 ORTHO05D003603 1.3e-07 61.6 149 29.5
Atru.chr8.2366 Acer truncatum HOM05D003341 ORTHO05D003603 1.6e-07 61.2 147 28.6
CsaV3_4G026990 Cucumis sativus L. HOM05D003341 ORTHO05D003603 1.6e-07 61.2 147 32.7
Gohir.A10G148300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 1.6e-07 61.2 148 30.4
PGR004G1582 Punica granatum HOM05D003341 ORTHO05D003603 2.1e-07 60.8 147 30.6
Migut.I01109 Erythranthe guttata HOM05D003341 ORTHO05D003603 3.7e-07 60.1 80 40.0
Oeu064882.1 Olea europaea HOM05D003341 ORTHO05D003603 3.7e-07 60.1 149 28.2
Cfa003499 Carpinus fangiana HOM05D003341 ORTHO05D003603 4.8e-07 59.7 79 39.2
Glyma.01G129600 Glycine max HOM05D003341 ORTHO05D003603 8.2e-07 58.9 79 38.0
Aqoxy2G00755 Aquilegia oxysepala HOM05D003341 ORTHO05D003603 1.1e-06 58.5 93 36.6
Cc04_g00980 Coffea canephora HOM05D003341 ORTHO05D003603 1.1e-06 58.5 146 29.5
VMungo1309G0789 Vigna mungo HOM05D003341 ORTHO05D003603 1.1e-06 58.5 114 30.7
CARHR089020 Cardamine hirsuta HOM05D003341 ORTHO05D003603 1.4e-06 58.2 79 39.2
ClCG04G006530 Citrullus lanatus HOM05D003341 ORTHO05D003603 1.4e-06 58.2 79 39.2
FAN02G2897 Fragaria x ananassa HOM05D003341 ORTHO05D003603 1.4e-06 58.2 79 38.0
QL05p003212 Quercus lobata HOM05D003341 ORTHO05D003603 1.4e-06 58.2 79 39.2
Ah.08g209790 Amaranthus hybridus HOM05D003341 ORTHO05D003603 1.8e-06 57.8 79 38.0
BcaC07g41777 Brassica carinata HOM05D006443 ORTHO05D007797 1.8e-06 57.8 29 82.8
AUR62006332 Chenopodium quinoa HOM05D003341 ORTHO05D003603 1.8e-06 57.8 82 36.6
Hma1.2p1_1349F.1_g277370 Hydrangea macrophylla HOM05D003341 ORTHO05D003603 1.8e-06 57.8 79 36.7
Sc10g0007940 Simmondsia chinensis HOM05D003341 ORTHO05D003603 1.8e-06 57.8 79 35.4
CANSAT56G3367 Cannabis sativa HOM05D003341 ORTHO05D003603 2.4e-06 57.4 99 32.3
Thhalv10020706m.g Eutrema salsugineum HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 38.0
FvH4_6g35240 Fragaria vesca HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 36.7
FAN09G0950 Fragaria x ananassa HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 36.7
FAN14G1485 Fragaria x ananassa HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 36.7
MBI15_g40704_MAGBIO Magnolia biondii HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 39.2
Phvul.009G262600 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 3.1e-06 57.0 114 30.7
Zm00001eb212020 Zea mays HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 38.0
EL10Ac7g17042 Beta vulgaris HOM05D003341 ORTHO05D003603 4.1e-06 56.6 82 36.6
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 4.1e-06 56.6 79 38.0
Glyma.19G263000 Glycine max HOM05D003341 ORTHO05D003603 5.3e-06 56.2 79 36.7
QL05p002051 Quercus lobata HOM05D003341 ORTHO05D003603 5.3e-06 56.2 79 38.0
Actinidia26012 Actinidia chinensis HOM05D003341 ORTHO05D003603 6.9e-06 55.8 116 34.5
ATR0681G237 Amborella trichopoda HOM05D003341 ORTHO05D003603 6.9e-06 55.8 79 38.0
Glyma.20G056000 Glycine max HOM05D003341 ORTHO05D003603 6.9e-06 55.8 79 36.7
Lalb_Chr12g0207541 Lupinus albus HOM05D003341 ORTHO05D003603 6.9e-06 55.8 104 33.7
RcHm_v2.0_Chr2g0146601 Rosa chinensis HOM05D003341 ORTHO05D003603 6.9e-06 55.8 79 36.7
Thecc.06G125900 Theobroma cacao HOM05D003341 ORTHO05D003603 6.9e-06 55.8 79 38.0
AUR62026370 Chenopodium quinoa HOM05D003341 ORTHO05D003603 9.0e-06 55.5 80 36.2
MELO3C026046.2 Cucumis melo HOM05D003341 ORTHO05D003603 9.0e-06 55.5 79 38.0
Duzib212G0416 Durio zibethinus HOM05D003341 ORTHO05D003603 9.0e-06 55.5 79 39.2
TWI14G1117 Tripterygium wilfordii HOM05D003341 ORTHO05D003603 9.0e-06 55.5 79 36.7


User provided reference genes

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