Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G144101 Manihot esculenta HOM05D003128 ORTHO05D004333 2.3e-148 528.9 268 100.0
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 1.0e-135 486.9 262 94.7
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 6.8e-132 474.2 262 91.2
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 3.4e-131 471.9 262 90.5
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 7.5e-131 470.7 262 90.1
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 9.8e-131 470.3 262 90.5
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.3e-130 469.9 262 90.1
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 2.8e-130 468.8 262 90.5
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 2.8e-130 468.8 262 90.5
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 3.7e-130 468.4 262 90.1
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 3.7e-130 468.4 262 88.9
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 4.9e-130 468.0 262 90.1
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 4.9e-130 468.0 262 89.3
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 4.9e-130 468.0 262 90.5
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 4.9e-130 468.0 262 90.5
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 1.4e-129 466.5 262 90.1
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.4e-129 466.5 262 89.7
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 1.6e-128 463.0 262 87.8
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 4.5e-128 461.5 262 88.5
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 5.9e-128 461.1 262 88.9
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 2.3e-127 459.1 262 89.7
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 2.9e-127 458.8 272 85.7
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 3.8e-127 458.4 262 86.3
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 5.0e-127 458.0 262 87.0
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 8.6e-127 457.2 262 88.9
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.6e-127 457.2 262 86.6
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.1e-126 456.8 262 87.4
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 1.1e-126 456.8 262 86.3
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 2.5e-126 455.7 262 86.3
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 3.3e-126 455.3 262 87.4
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 8.0e-125 450.7 262 84.7
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 8.0e-125 450.7 262 85.5
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 1.0e-124 450.3 262 85.9
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.4e-124 449.9 262 87.0
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 2.3e-124 449.1 262 85.5
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 4.0e-124 448.4 253 88.1
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 8.9e-124 447.2 262 85.5
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 1.2e-123 446.8 253 87.7
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 2.6e-123 445.7 253 87.0
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 4.4e-123 444.9 276 82.2
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.4e-123 444.9 262 84.7
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 9.8e-123 443.7 262 84.7
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 1.3e-122 443.4 253 86.6
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.3e-122 443.4 280 81.4
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 1.7e-122 443.0 253 86.2
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.7e-122 443.0 253 86.2
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 1.7e-122 443.0 262 83.2
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 2.9e-122 442.2 253 86.6
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.9e-122 441.4 253 86.2
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 6.4e-122 441.0 262 84.0
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 8.3e-122 440.7 262 83.6
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 1.4e-121 439.9 262 83.6
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 1.9e-121 439.5 274 81.4
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 7.0e-121 437.6 262 82.4
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 1.6e-120 436.4 262 81.7
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 3.5e-120 435.3 262 80.9
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 1.7e-119 433.0 262 82.1
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 3.0e-119 432.2 262 83.6
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 3.9e-119 431.8 262 82.1
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 8.6e-119 430.6 262 80.2
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 1.5e-118 429.9 262 82.1
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 3.3e-118 428.7 262 81.3
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 3.3e-118 428.7 262 82.1
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 4.3e-118 428.3 262 80.9
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 4.3e-118 428.3 262 80.9
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 4.3e-118 428.3 262 80.9
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 5.6e-118 427.9 262 82.4
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 2.1e-117 426.0 262 80.2
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 3.6e-117 425.2 262 80.5
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 3.6e-117 425.2 262 81.3
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 4.7e-117 424.9 262 80.5
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 4.7e-117 424.9 262 80.5
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 6.2e-117 424.5 262 80.5
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 1.8e-116 422.9 262 79.8
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 1.8e-116 422.9 262 79.8
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 6.8e-116 421.0 262 78.2
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 1.2e-115 420.2 262 82.4
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 1.2e-115 420.2 244 87.7
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 1.5e-115 419.9 262 79.4
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 2.6e-115 419.1 262 79.4
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 3.4e-115 418.7 262 78.6
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 3.4e-115 418.7 253 82.2
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 5.8e-115 417.9 262 78.6
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.7e-114 416.4 263 80.2
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 2.2e-114 416.0 262 78.6
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 2.2e-114 416.0 262 77.9
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 2.2e-114 416.0 262 77.9
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.2e-114 416.0 262 78.6
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 2.2e-114 416.0 263 79.5
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 2.9e-114 415.6 262 77.5
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 2.9e-114 415.6 262 77.5
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.9e-114 415.6 262 78.6
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 8.3e-114 414.1 262 77.5
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 1.1e-113 413.7 262 77.5
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.9e-113 412.9 262 77.1
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.2e-113 412.1 263 78.7
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 4.1e-113 411.8 262 77.9
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 9.2e-113 410.6 262 79.8
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 2.7e-112 409.1 262 79.0
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 2.7e-112 409.1 228 89.5
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 6.0e-112 407.9 262 76.7
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 6.0e-112 407.9 262 76.7
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 6.0e-112 407.9 262 78.2
Actinidia04640 Actinidia chinensis HOM05D003128 ORTHO05D004333 7.3e-110 401.0 245 83.7
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 3.6e-109 398.7 262 77.1
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 3.4e-107 392.1 253 79.8
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 4.9e-106 388.3 264 74.2
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 8.3e-106 387.5 253 74.7
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 1.1e-105 387.1 254 76.4
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.4e-105 386.7 251 77.3
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.9e-105 386.3 254 73.2
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 3.2e-105 385.6 262 74.4
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 5.4e-105 384.8 262 74.0
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 7.1e-105 384.4 304 66.8
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 7.8e-104 380.9 262 74.8
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 1.0e-103 380.6 262 71.4
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 3.9e-103 378.6 262 76.0
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.5e-102 375.9 262 73.3
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 4.3e-102 375.2 254 71.3
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 5.6e-102 374.8 270 67.8
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 2.8e-101 372.5 262 67.6
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 1.1e-100 370.5 262 71.8
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 5.2e-100 368.2 270 72.2
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 1.7e-98 363.2 253 70.0
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 3.8e-98 362.1 300 61.3
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 6.4e-98 361.3 266 72.6
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.1e-97 360.5 266 72.2
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 4.2e-97 358.6 296 62.8
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.6e-96 356.7 262 69.8
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 5.1e-95 351.7 221 76.5
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 2.6e-91 339.3 262 67.9
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 6.0e-88 328.2 262 62.2
ECA236G4711 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.8e-85 318.5 247 67.6
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 6.2e-85 318.2 255 62.7
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 8.4e-82 307.8 259 59.5
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 3.2e-81 305.8 196 79.6
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.2e-81 305.4 263 63.9
MBI01_g28993_MAGBIO Magnolia biondii HOM05D003128 ORTHO05D004333 2.5e-78 296.2 164 90.2
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 9.0e-76 287.7 185 75.1
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.8e-74 282.3 184 71.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 9.6e-70 267.7 289 54.0
Haze_27374 Corylus avellana HOM05D003128 ORTHO05D004333 4.2e-65 252.3 219 53.0
Sed0009581 Sechium edule HOM05D003128 ORTHO05D004333 2.7e-64 249.6 185 64.9
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.8e-63 246.9 200 64.5
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 1.6e-56 223.8 171 66.7
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 7.0e-44 181.8 132 67.4
FvH4_5g28550 Fragaria vesca HOM05D003128 ORTHO05D017009 2.5e-41 173.3 117 77.8
FAN12G2314 Fragaria x ananassa HOM05D003128 ORTHO05D017009 2.5e-41 173.3 117 77.8
FvH4_6g25830 Fragaria vesca HOM05D003128 ORTHO05D017009 5.5e-41 172.2 116 77.6
FvH4_3g27400 Fragaria vesca HOM05D003128 ORTHO05D017009 7.4e-38 161.8 110 77.3
FvH4_6g25650 Fragaria vesca HOM05D003128 ORTHO05D017009 9.4e-33 144.8 111 67.6
EL10Ac3g06887 Beta vulgaris HOM05D003128 ORTHO05D004333 2.1e-32 143.7 91 80.2
Actinidia12216 Actinidia chinensis HOM05D003128 ORTHO05D038025 5.2e-31 139.0 76 90.8
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.2e-30 137.9 144 57.6
SEGI_25321 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 1.2e-30 137.9 100 67.0
SHI09338 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-27 126.3 86 70.9
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 7.0e-20 102.1 64 75.0
Gohir.A11G182401 Gossypium hirsutum HOM05D003128 ORTHO05D017009 1.6e-19 100.9 64 75.0
Gohir.D07G214150 Gossypium hirsutum HOM05D003128 ORTHO05D017009 1.6e-19 100.9 64 75.0
Gohir.D13G012301 Gossypium hirsutum HOM05D003128 ORTHO05D017009 1.6e-19 100.9 64 75.0
Gorai.011G112600 Gossypium raimondii HOM05D003128 ORTHO05D017009 1.6e-19 100.9 64 75.0
Nitab4.5_0000110g0220 Nicotiana tabacum HOM05D003128 ORTHO05D038025 4.7e-16 89.4 65 72.3
SHI39228 Sapria himalayana HOM05D003128 ORTHO05D000778 1.0e-10 71.6 45 66.7
SHI45136 Sapria himalayana HOM05D003128 ORTHO05D004333 1.3e-10 71.2 40 75.0
SHI48834 Sapria himalayana HOM05D008459 ORTHO05D003903 6.6e-10 68.9 45 66.7
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 2.1e-08 63.9 59 55.9
SHI29408 Sapria himalayana HOM05D003128 ORTHO05D004333 7.5e-06 55.5 39 61.5


User provided reference genes

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