Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 9.1e-251 869.8 442 100.0
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 6.2e-191 671.0 439 80.4
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.8e-166 589.7 448 69.9
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 3.1e-166 589.0 448 69.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.0e-165 586.3 450 69.6
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 5.1e-161 571.6 450 68.4
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.1e-160 570.5 443 70.0
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 3.3e-160 568.9 438 69.4
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 7.4e-160 567.8 439 68.1
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 7.0e-158 561.2 440 69.8
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 5.9e-157 558.1 444 67.8
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.0e-156 557.4 443 68.4
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.7e-156 556.6 438 67.8
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.9e-155 553.1 441 68.3
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 4.2e-155 552.0 441 68.0
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.2e-155 552.0 447 66.0
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 9.4e-155 550.8 453 65.6
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.2e-154 550.4 443 66.4
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.7e-154 549.3 442 66.5
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 3.6e-154 548.9 447 66.9
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-153 547.4 447 65.5
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 2.6e-152 542.7 447 65.8
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 3.3e-152 542.3 443 66.6
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.7e-152 541.6 447 65.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 5.7e-152 541.6 399 70.9
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.3e-151 540.4 448 66.7
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 4.8e-151 538.5 442 67.0
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 8.2e-151 537.7 447 66.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.4e-150 537.0 487 60.0
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 5.3e-150 535.0 437 64.3
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 5.9e-149 531.6 451 63.4
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 7.7e-149 531.2 448 66.3
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.3e-148 530.4 442 65.8
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.2e-148 529.6 437 63.8
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.2e-148 529.6 439 67.0
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-147 526.9 386 71.0
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-147 526.9 386 71.5
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.5e-147 526.9 435 66.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.1e-146 523.1 434 65.4
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 3.6e-146 522.3 416 67.5
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 4.7e-146 521.9 407 67.8
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 8.0e-146 521.2 440 63.2
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 8.8e-145 517.7 436 65.4
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.5e-144 516.9 409 66.7
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 2.6e-144 516.2 400 69.0
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.4e-144 515.4 440 62.7
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 7.5e-144 514.6 435 65.1
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 2.8e-143 512.7 404 66.3
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 6.3e-143 511.5 445 62.2
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-142 510.8 410 66.1
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.4e-142 510.4 439 66.3
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.2e-141 507.3 439 63.3
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.7e-141 506.1 409 65.5
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 7.7e-141 504.6 408 65.7
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.3e-140 503.8 472 62.1
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 5.0e-140 501.9 442 61.8
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 6.5e-140 501.5 399 65.9
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.1e-139 500.7 449 61.5
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.5e-139 500.4 455 61.8
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 5.5e-139 498.4 400 66.5
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 9.4e-139 497.7 451 61.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.1e-138 496.5 448 60.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 3.6e-138 495.7 444 60.8
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 8.0e-138 494.6 403 65.5
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 5.2e-137 491.9 399 65.2
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 5.2e-137 491.9 382 67.3
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 6.8e-137 491.5 409 64.3
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 8.8e-137 491.1 399 64.9
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 8.8e-137 491.1 399 64.9
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 3.4e-136 489.2 341 75.4
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.7e-135 486.9 411 62.0
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.8e-135 486.1 447 60.2
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 4.8e-135 485.3 442 60.6
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 8.3e-135 484.6 398 64.6
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.4e-134 483.0 382 66.5
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 2.0e-133 479.9 401 62.6
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.7e-132 476.9 411 63.3
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 5.0e-132 475.3 350 68.9
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 6.6e-132 474.9 437 58.6
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 7.2e-131 471.5 430 58.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 3.4e-128 462.6 452 57.1
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.1e-126 457.6 312 74.7
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 9.2e-126 454.5 359 66.9
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.3e-123 446.0 419 59.4
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 4.3e-123 445.7 399 60.7
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 4.3e-123 445.7 389 60.2
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.3e-123 445.7 494 53.2
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 7.3e-123 444.9 399 60.7
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 1.2e-120 437.6 380 62.1
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.6e-117 427.2 384 59.6
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 4.6e-117 425.6 507 49.5
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.0e-116 424.5 438 56.2
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.8e-114 416.4 411 56.7
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 6.4e-111 405.2 377 57.6
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 4.6e-109 399.1 502 46.6
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.9e-107 393.7 358 55.9
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.5e-107 393.3 411 54.5
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 5.6e-107 392.1 366 57.1
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.1e-106 390.2 437 51.9
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 4.4e-104 382.5 309 67.3
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.4e-97 360.1 375 53.1
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.1e-94 348.6 302 59.6
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 4.3e-91 339.3 424 46.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 5.3e-89 332.4 375 50.7
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 6.9e-89 332.0 242 66.9
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.0e-88 330.5 449 46.1
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 5.8e-88 328.9 360 55.6
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.3e-83 313.2 358 49.4
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.8e-82 310.1 375 48.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.4e-80 303.1 249 65.9
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-77 294.7 206 71.4
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.0e-76 291.6 343 45.5
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.5e-67 260.4 440 40.0
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 5.7e-67 259.2 255 56.1
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.3e-66 258.1 185 68.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 7.6e-64 248.8 344 43.9
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 7.9e-53 212.2 355 39.2
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.8e-52 211.1 295 44.7
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 5.1e-44 183.0 391 31.5
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.9e-30 137.9 94 74.5
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.7e-24 117.5 78 70.5
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.2e-21 108.6 177 39.5
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 2.3e-20 104.4 66 77.3
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.5e-19 101.7 127 50.4
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.4e-17 93.2 91 56.0
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 2.0e-16 91.3 164 44.5
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 2.9e-15 87.4 54 68.5
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.5e-14 85.1 192 33.9
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 7.2e-14 82.8 89 49.4
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.3e-12 77.8 95 46.3
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.7e-10 70.5 136 40.4
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.4e-09 68.6 54 55.6
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.9e-06 58.2 48 54.2


User provided reference genes

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