Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G002901 Manihot esculenta HOM05D015295 ORTHO05D004325 6.3e-85 317.4 160 100.0
Manes.12G002900 Manihot esculenta HOM05D015295 ORTHO05D009969 2.4e-76 288.9 165 90.3
Manes.12G002600 Manihot esculenta HOM05D015295 ORTHO05D009969 7.8e-75 283.9 159 92.5
Potri.008G020300 Populus trichocarpa HOM05D015295 ORTHO05D009969 1.1e-17 94.0 134 40.3
Sabra08G0013600 Salix brachista HOM05D015295 ORTHO05D009969 1.1e-17 94.0 122 41.8
Sabra10G0187100 Salix brachista HOM05D015295 ORTHO05D009969 1.5e-17 93.6 125 42.4
Potri.010G238900 Populus trichocarpa HOM05D015295 ORTHO05D009969 6.2e-16 88.2 131 38.9
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 3.4e-14 82.4 137 38.7
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 7.6e-14 81.3 128 35.9
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 4.9e-13 78.6 152 38.2
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 2.5e-12 76.3 159 34.0
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 4.2e-12 75.5 152 35.5
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 4.2e-12 75.5 128 34.4
FAN04G1442 Fragaria x ananassa HOM05D016120 ORTHO05D013324 1.6e-11 73.6 141 34.8
MBI10_g35440_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 3.5e-11 72.4 134 36.6
Lalb_Chr23g0265491 Lupinus albus HOM05D000307 ORTHO05D000166 6.1e-11 71.6 136 35.3
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 6.1e-11 71.6 137 32.8
MBI10_g26051_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 7.9e-11 71.2 134 35.8
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.3e-10 70.5 149 33.6
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.3e-10 69.7 137 35.8
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 2.3e-10 69.7 141 35.5
Lalb_Chr05g0223381 Lupinus albus HOM05D000307 ORTHO05D000166 2.3e-10 69.7 138 36.2
Sabra10G0139000 Salix brachista HOM05D001295 ORTHO05D050580 3.0e-10 69.3 125 34.4
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 3.9e-10 68.9 138 34.8
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 8.7e-10 67.8 139 34.5
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 8.7e-10 67.8 138 34.1
Prupe.7G031800 Prunus persica HOM05D000307 ORTHO05D000166 1.1e-09 67.4 178 30.9
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.5e-09 67.0 137 31.4
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.5e-09 67.0 139 33.1
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-09 67.0 139 33.1
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.5e-09 67.0 139 33.1
Prupe.7G030800 Prunus persica HOM05D000307 ORTHO05D000166 1.5e-09 67.0 172 29.7
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 1.9e-09 66.6 139 31.7
MBI10_g35438_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.9e-09 66.6 131 34.4
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.9e-09 66.6 135 34.1
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 2.5e-09 66.2 159 30.2
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 3.3e-09 65.9 135 32.6
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.3e-09 65.9 135 34.1
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 4.3e-09 65.5 139 30.9
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 5.7e-09 65.1 139 33.8
MBI10_g26049_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 5.7e-09 65.1 120 36.7
Potri.010G181300 Populus trichocarpa HOM05D015295 ORTHO05D050580 5.7e-09 65.1 125 33.6
FAN13G0405 Fragaria x ananassa HOM05D016120 ORTHO05D013324 7.4e-09 64.7 158 31.6
Prupe.7G032000 Prunus persica HOM05D000307 ORTHO05D000166 7.4e-09 64.7 178 29.8
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 9.7e-09 64.3 136 30.1
Prupe.7G030200 Prunus persica HOM05D000307 ORTHO05D000166 9.7e-09 64.3 110 35.5
FAN08G0332 Fragaria x ananassa HOM05D016120 ORTHO05D013324 1.6e-08 63.5 150 31.3
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.6e-08 63.5 134 32.1
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 2.2e-08 63.2 127 31.5
Duzib264G0859 Durio zibethinus HOM05D000307 ORTHO05D000166 2.2e-08 63.2 135 31.9
FvH4_5g27070 Fragaria vesca HOM05D016120 ORTHO05D013324 2.2e-08 63.2 158 31.0
FAN18G0925 Fragaria x ananassa HOM05D016120 ORTHO05D013324 2.2e-08 63.2 158 31.0
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 2.8e-08 62.8 141 29.1
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 2.8e-08 62.8 141 29.1
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.8e-08 62.8 148 31.1
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.8e-08 62.8 135 33.3
arahy.Tifrunner.gnm1.ann1.P24S13 Arachis hypogaea HOM05D000307 ORTHO05D000166 3.7e-08 62.4 139 33.8
Gohir.D11G185000 Gossypium hirsutum HOM05D000307 ORTHO05D000166 3.7e-08 62.4 132 30.3
Gorai.007G196600 Gossypium raimondii HOM05D000307 ORTHO05D000166 3.7e-08 62.4 132 30.3
Potri.015G077800 Populus trichocarpa HOM05D006887 ORTHO05D009969 3.7e-08 62.4 147 31.3
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.7e-08 62.4 58 48.3
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 4.8e-08 62.0 146 30.1
Cpa.g.sc25.11 Carica papaya HOM05D063200 ORTHO05D009969 4.8e-08 62.0 138 34.1
Sabra15G0102400 Salix brachista HOM05D006887 ORTHO05D009969 6.3e-08 61.6 135 33.3
Lj5g0004947 Lotus japonicus HOM05D000307 ORTHO05D000166 8.2e-08 61.2 133 33.1
Lj5g0023944 Lotus japonicus HOM05D000307 ORTHO05D000166 8.2e-08 61.2 133 33.1
Sed0006669 Sechium edule HOM05D000307 ORTHO05D000166 1.1e-07 60.8 135 29.6
SEGI_05719 Sequoiadendron giganteum HOM05D066287 ORTHO05D000166 1.1e-07 60.8 140 30.7
Dinv15101 Davidia involucrata HOM05D000307 ORTHO05D000166 1.4e-07 60.5 140 33.6
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.4e-07 60.5 144 29.9
Thecc.01G021900 Theobroma cacao HOM05D000307 ORTHO05D000166 1.4e-07 60.5 132 31.8
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 1.4e-07 60.5 141 33.3
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 1.8e-07 60.1 155 27.7
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 1.8e-07 60.1 155 27.7
Ca_13731_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.8e-07 60.1 138 33.3
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 1.8e-07 60.1 144 31.2
FAN27G3405 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.8e-07 60.1 138 33.3
MBI10_g35436_MAGBIO Magnolia biondii HOM05D002111 ORTHO05D002160 1.8e-07 60.1 120 35.0
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 1.8e-07 60.1 146 30.8
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.8e-07 60.1 125 32.0
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 3.1e-07 59.3 155 27.7
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.1e-07 59.3 139 30.9
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.1e-07 59.3 125 32.0
TPR.G1441 Trifolium pratense HOM05D000307 ORTHO05D000166 3.1e-07 59.3 139 31.7
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 4.1e-07 58.9 67 41.8
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 4.1e-07 58.9 129 31.0
Dinv29104 Davidia involucrata HOM05D000307 ORTHO05D000166 4.1e-07 58.9 139 30.2
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 4.1e-07 58.9 170 30.6
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.1e-07 58.9 170 30.6
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.1e-07 58.9 170 30.6
Gohir.A11G177200 Gossypium hirsutum HOM05D000307 ORTHO05D000166 4.1e-07 58.9 136 30.9
Cpa.g.sc25.27 Carica papaya HOM05D063200 ORTHO05D009969 5.3e-07 58.5 138 33.3
Cfa007888 Carpinus fangiana HOM05D000307 ORTHO05D000166 5.3e-07 58.5 144 30.6
ClCG02G000370 Citrullus lanatus HOM05D000307 ORTHO05D000166 5.3e-07 58.5 135 26.7
MELO3C023227.2 Cucumis melo HOM05D000307 ORTHO05D000166 5.3e-07 58.5 136 30.1
FAN12G1561 Fragaria x ananassa HOM05D016120 ORTHO05D013324 5.3e-07 58.5 163 30.1
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.3e-07 58.5 127 31.5
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 6.9e-07 58.2 140 32.1
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 6.9e-07 58.2 130 30.8
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.9e-07 58.2 141 28.4
FvH4_4g07700 Fragaria vesca HOM05D016120 ORTHO05D013324 6.9e-07 58.2 163 30.1
FAN20G0315 Fragaria x ananassa HOM05D000307 ORTHO05D000166 6.9e-07 58.2 138 32.6
FAN22G2097 Fragaria x ananassa HOM05D016120 ORTHO05D013324 6.9e-07 58.2 170 31.2
Peaxi162Scf00076g01010 Petunia axillaris HOM05D000307 ORTHO05D000166 6.9e-07 58.2 134 32.8
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 9.0e-07 57.8 129 33.3
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-06 57.4 139 28.1
Medtr6g018920 Medicago truncatula HOM05D000307 ORTHO05D000166 1.2e-06 57.4 139 32.4
Solyc11g020660.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 1.2e-06 57.4 132 27.3
CDE02G2624 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 1.5e-06 57.0 61 47.5
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.5e-06 57.0 128 28.9
Sopen11g010690 Solanum pennellii HOM05D000307 ORTHO05D000166 1.5e-06 57.0 152 27.0
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 2.0e-06 56.6 141 29.1
Hma1.2p1_0038F.1_g024040 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 2.0e-06 56.6 148 29.7
Rhsim08G0003700 Rhododendron simsii HOM05D000307 ORTHO05D000166 2.0e-06 56.6 138 31.2
Lj1C1007T16 Lonicera japonica HOM05D000307 ORTHO05D000166 2.6e-06 56.2 132 32.6
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 2.6e-06 56.2 128 29.7
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 3.4e-06 55.8 135 31.1
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 3.4e-06 55.8 127 33.9
Nitab4.5_0000365g0070 Nicotiana tabacum HOM05D000307 ORTHO05D000166 4.5e-06 55.5 127 29.9
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 4.5e-06 55.5 151 29.1
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 4.5e-06 55.5 138 31.2
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 5.9e-06 55.1 155 27.1
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 5.9e-06 55.1 155 27.1
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 5.9e-06 55.1 55 40.0
Ca_02546_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 5.9e-06 55.1 153 28.8
FAN09G4481 Fragaria x ananassa HOM05D000307 ORTHO05D000166 5.9e-06 55.1 132 32.6
Glyma.05G140000 Glycine max HOM05D000307 ORTHO05D000166 5.9e-06 55.1 133 31.6
Medtr1g114730 Medicago truncatula HOM05D000307 ORTHO05D000166 5.9e-06 55.1 138 32.6
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 7.7e-06 54.7 138 29.7
Ca_02497_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 7.7e-06 54.7 153 28.1
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.7e-06 54.7 128 32.0
Sopen05g008160 Solanum pennellii HOM05D013339 ORTHO05D009969 7.7e-06 54.7 134 33.6
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.7e-06 54.7 139 29.5
ATR0626G298 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.0e-05 54.3 42 61.9
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 1.0e-05 54.3 138 29.0
CiPaw.04G086700 Carya illinoinensis HOM05D000307 ORTHO05D000166 1.0e-05 54.3 146 30.1
Oeu046900.1 Olea europaea HOM05D000307 ORTHO05D000166 1.0e-05 54.3 141 29.8
Oeu048605.1 Olea europaea HOM05D041624 ORTHO05D009969 1.0e-05 54.3 95 37.9
Oeu048608.1 Olea europaea HOM05D041624 ORTHO05D009969 1.0e-05 54.3 95 37.9
Oeu061769.1 Olea europaea HOM05D000307 ORTHO05D000166 1.0e-05 54.3 141 29.1
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 1.0e-05 54.3 55 43.6
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 1.0e-05 54.3 134 32.1


User provided reference genes

Program Settings