Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G098002 Manihot esculenta HOM05D002899 ORTHO05D003850 1.6e-74 283.1 147 100.0
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 2.6e-69 265.8 142 97.2
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 3.8e-60 235.3 142 83.8
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 6.4e-60 234.6 142 83.8
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 8.4e-60 234.2 142 83.8
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.7e-58 229.2 142 83.8
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 3.5e-58 228.8 140 82.9
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 3.9e-57 225.3 140 82.1
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 1.1e-56 223.8 140 80.7
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 4.3e-56 221.9 140 80.7
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 4.3e-56 221.9 140 81.4
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.3e-55 220.3 140 79.3
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 1.6e-55 219.9 142 78.9
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 2.1e-55 219.5 140 78.6
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 1.1e-54 217.2 140 78.6
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 3.1e-54 215.7 142 77.5
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 1.2e-53 213.8 140 76.4
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.5e-53 213.4 140 77.1
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 1.5e-53 213.4 142 78.2
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 2.6e-53 212.6 140 75.7
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 3.4e-53 212.2 140 77.1
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 3.4e-53 212.2 140 76.4
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 4.5e-53 211.8 140 75.7
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 4.5e-53 211.8 140 75.7
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 5.8e-53 211.5 140 77.1
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 7.6e-53 211.1 140 76.4
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.0e-52 210.7 140 72.9
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.0e-52 210.7 140 77.1
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.3e-52 210.3 140 75.7
Lj5P331T31 Lonicera japonica HOM05D002899 ORTHO05D003850 1.3e-52 210.3 140 76.4
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 1.3e-52 210.3 140 73.6
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 1.3e-52 210.3 140 73.6
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 1.3e-52 210.3 140 73.6
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 2.2e-52 209.5 140 74.3
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 2.9e-52 209.1 146 73.3
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 3.8e-52 208.8 140 76.4
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 4.9e-52 208.4 140 75.7
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 4.9e-52 208.4 142 73.2
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 4.9e-52 208.4 140 72.9
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 8.4e-52 207.6 142 75.4
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 1.1e-51 207.2 140 75.0
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 1.1e-51 207.2 140 75.0
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 1.4e-51 206.8 142 72.5
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.9e-51 206.5 140 76.4
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 1.9e-51 206.5 140 74.3
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 2.5e-51 206.1 140 73.6
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 2.5e-51 206.1 140 72.9
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 3.2e-51 205.7 140 71.4
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 3.2e-51 205.7 140 71.4
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 9.3e-51 204.1 140 73.6
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 1.2e-50 203.8 142 71.8
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 1.2e-50 203.8 140 73.6
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 1.2e-50 203.8 142 71.8
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 2.7e-50 202.6 142 71.8
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 3.5e-50 202.2 142 69.7
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 3.5e-50 202.2 142 70.4
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 3.5e-50 202.2 142 70.4
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 3.5e-50 202.2 142 70.4
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 3.5e-50 202.2 142 70.4
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 4.6e-50 201.8 142 71.8
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 6.0e-50 201.4 140 71.4
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.0e-49 200.7 140 72.9
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 1.0e-49 200.7 142 70.4
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 1.3e-49 200.3 140 72.9
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.8e-49 199.9 139 73.4
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 2.3e-49 199.5 140 70.7
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.3e-49 199.5 140 70.7
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 3.0e-49 199.1 142 71.1
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 5.1e-49 198.4 141 69.5
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 6.7e-49 198.0 142 71.8
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 6.7e-49 198.0 142 71.8
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.1e-48 197.2 140 71.4
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 3.3e-48 195.7 140 70.0
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 3.3e-48 195.7 142 69.7
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 5.7e-48 194.9 140 70.0
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 9.6e-48 194.1 140 68.6
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.8e-47 192.6 140 69.3
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 3.7e-47 192.2 142 70.4
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.7e-47 192.2 140 69.3
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 3.7e-47 192.2 142 67.6
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 4.8e-47 191.8 142 70.4
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 8.2e-47 191.0 140 66.4
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 3.1e-46 189.1 140 67.9
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 3.1e-46 189.1 140 68.6
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 5.3e-46 188.3 142 68.3
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 9.0e-46 187.6 140 67.1
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 9.0e-46 187.6 142 66.2
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 1.2e-45 187.2 142 68.3
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.6e-45 186.0 140 64.3
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 4.5e-45 185.3 142 68.3
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 5.9e-45 184.9 142 67.6
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 7.6e-45 184.5 142 68.3
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 7.6e-45 184.5 142 68.3
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 7.6e-45 184.5 142 68.3
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 7.6e-45 184.5 140 65.0
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 7.6e-45 184.5 140 65.0
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 1.0e-44 184.1 142 68.3
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 1.7e-44 183.3 140 66.4
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 1.7e-44 183.3 142 64.1
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.2e-44 183.0 140 67.9
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 2.9e-44 182.6 140 67.1
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 2.9e-44 182.6 142 64.8
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 5.0e-44 181.8 140 62.9
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 6.5e-44 181.4 140 66.4
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.4e-43 180.3 142 66.2
TPR.G27642 Trifolium pratense HOM05D002899 ORTHO05D003850 1.9e-43 179.9 146 64.4
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.5e-43 178.3 142 62.7
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 7.2e-43 177.9 140 62.9
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.0e-41 174.1 142 62.0
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 2.8e-39 166.0 140 59.3
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 6.3e-39 164.9 132 62.1
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 6.3e-39 164.9 143 61.5
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 1.8e-38 163.3 140 64.3
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.2e-37 160.6 139 60.4
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.5e-37 160.2 140 57.9
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 7.7e-37 157.9 127 64.6
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.7e-36 156.8 142 64.8
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 2.2e-36 156.4 142 59.9
Sc09g0008530 Simmondsia chinensis HOM05D002899 ORTHO05D003850 6.5e-36 154.8 124 62.1
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 4.2e-35 152.1 140 55.7
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 4.2e-35 152.1 140 57.9
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 1.8e-33 146.7 141 58.9
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 6.7e-33 144.8 142 54.2
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.0e-32 143.3 142 56.3
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 9.7e-32 141.0 140 55.0
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.1e-30 137.5 125 53.6
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 6.9e-30 134.8 105 66.7
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 9.1e-30 134.4 138 50.0
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 1.5e-29 133.7 140 52.1
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 1.5e-29 133.7 140 52.1
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 7.7e-29 131.3 86 81.4
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 2.2e-28 129.8 86 79.1
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 2.9e-28 129.4 140 46.4
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 5.0e-28 128.6 140 46.4
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 6.5e-28 128.3 140 46.4
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 3.6e-26 122.5 140 43.6
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 1.0e-25 120.9 140 45.7
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.3e-25 119.8 89 69.7
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.3e-25 119.8 133 50.4
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.5e-24 117.1 140 44.3
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 3.3e-24 115.9 138 47.8
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.3e-23 114.0 137 47.4
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.7e-23 113.6 140 43.6
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.4e-22 110.5 76 75.0
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 7.0e-22 108.2 90 63.3
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 9.1e-22 107.8 140 41.4
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 1.2e-21 107.5 99 56.6
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.9e-21 105.1 126 45.2
Lj9A25T22 Lonicera japonica HOM05D002899 ORTHO05D003850 1.7e-20 103.6 70 78.6
Eucgr.G00836 Eucalyptus grandis HOM05D002899 ORTHO05D003850 2.2e-20 103.2 75 73.3
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 2.2e-20 103.2 141 39.0
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 3.8e-20 102.4 71 63.4
TPR.G26966 Trifolium pratense HOM05D002899 ORTHO05D003850 4.4e-16 89.0 74 66.2
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 1.3e-15 87.4 54 75.9
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.7e-15 87.0 66 57.6
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 2.2e-15 86.7 141 37.6
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 2.2e-15 86.7 49 75.5
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.8e-15 86.3 66 56.1
Ciclev10031700m.g Citrus clementina HOM05D002899 ORTHO05D003850 3.7e-15 85.9 88 52.3
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 4.8e-15 85.5 66 57.6
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 6.3e-15 85.1 68 60.3
Eucgr.G00703 Eucalyptus grandis HOM05D002899 ORTHO05D003850 8.2e-15 84.7 71 66.2
Ciclev10018077m.g Citrus clementina HOM05D002899 ORTHO05D003850 1.8e-14 83.6 96 43.8
Aqoxy6G01664 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 4.1e-14 82.4 61 68.9
PGR031G2485 Punica granatum HOM05D002899 ORTHO05D003850 9.1e-14 81.3 101 53.5
Aqoxy1G02234 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 4.5e-13 79.0 86 47.7
DCAR_011062 Daucus carota HOM05D002899 ORTHO05D003850 7.7e-13 78.2 48 75.0
DCAR_009599 Daucus carota HOM05D002899 ORTHO05D003850 1.0e-12 77.8 44 86.4
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 2.9e-12 76.3 128 32.8
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 5.0e-12 75.5 49 75.5
Ciclev10015230m.g Citrus clementina HOM05D002899 ORTHO05D003850 8.5e-12 74.7 76 48.7
COL.COLO4_24094 Corchorus olitorius HOM05D002899 ORTHO05D003850 3.2e-11 72.8 70 50.0
COL.COLO4_00251 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.4e-09 67.4 81 45.7
Actinidia24632 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.6e-08 63.2 59 66.1
PRCOL_00003671 Prasinoderma coloniale HOM05D002899 ORTHO05D003850 2.6e-08 63.2 152 30.9
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 5.7e-08 62.0 104 38.5
Glyma.18G031866 Glycine max HOM05D002899 ORTHO05D027421 9.1e-06 54.7 48 60.4


User provided reference genes

Program Settings