Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.0e-139 500.0 243 100.0
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 2.4e-120 435.6 244 85.2
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 3.2e-120 435.3 242 85.5
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 7.0e-120 434.1 243 85.6
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.2e-120 433.7 244 85.7
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 6.0e-119 431.0 243 86.0
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 6.0e-119 431.0 244 84.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.0e-119 431.0 244 84.4
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.3e-118 429.9 244 83.6
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 3.9e-118 428.3 241 83.0
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 6.6e-118 427.6 243 84.4
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 8.6e-118 427.2 244 83.2
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 1.1e-117 426.8 242 81.8
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 3.3e-117 425.2 243 81.9
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 7.3e-117 424.1 242 83.9
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 9.5e-117 423.7 243 81.1
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 9.5e-117 423.7 243 84.0
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 1.6e-116 422.9 245 82.0
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 6.2e-116 421.0 244 83.2
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 6.2e-116 421.0 242 83.1
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 8.1e-116 420.6 258 79.8
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.1e-115 420.2 243 80.7
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-115 419.9 243 80.7
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.8e-115 419.5 244 82.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 5.2e-115 417.9 244 82.4
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 6.8e-115 417.5 243 80.2
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-114 416.8 244 82.0
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 3.4e-114 415.2 242 82.2
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 3.4e-114 415.2 243 80.2
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 3.4e-114 415.2 243 81.1
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 4.4e-114 414.8 243 77.4
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 4.4e-114 414.8 243 80.2
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 5.8e-114 414.5 241 80.5
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.4e-112 409.8 243 81.5
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.4e-112 409.8 243 79.8
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 7.1e-112 407.5 241 80.1
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 9.2e-112 407.1 243 78.6
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.2e-111 406.8 244 80.7
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.1e-111 406.0 243 78.2
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 7.8e-111 404.1 244 77.9
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 1.0e-110 403.7 243 77.4
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.0e-110 403.7 242 78.9
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 78.3
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 78.3
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.3e-110 403.3 244 78.3
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.0e-110 402.1 244 77.9
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 6.6e-110 401.0 242 77.3
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 8.6e-110 400.6 244 77.0
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 8.6e-110 400.6 242 77.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 8.6e-110 400.6 244 79.5
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 77.9
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 77.0
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 4.3e-109 398.3 244 77.0
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 7.3e-109 397.5 244 76.2
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 7.3e-109 397.5 284 69.7
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 9.5e-109 397.1 241 77.6
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 9.5e-109 397.1 244 77.5
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.6e-108 396.4 229 83.8
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.6e-108 396.4 243 77.4
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 4.7e-108 394.8 244 79.1
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 4.7e-108 394.8 274 70.4
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 6.2e-108 394.4 224 83.0
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.1e-107 393.7 245 76.3
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.1e-107 393.7 238 78.6
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 1.4e-107 393.3 243 75.7
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 75.4
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 2.4e-107 392.5 230 80.0
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 5.2e-107 391.3 244 75.4
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 5.2e-107 391.3 244 77.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 5.2e-107 391.3 244 77.0
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 5.2e-107 391.3 244 78.7
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 8.9e-107 390.6 228 80.7
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-106 390.2 245 75.5
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 2.6e-106 389.0 245 75.1
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.8e-106 387.9 245 74.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 9.9e-106 387.1 243 75.3
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.7e-105 386.3 244 76.2
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 8.4e-105 384.0 295 65.1
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.1e-104 383.6 243 72.4
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.1e-104 383.6 214 85.5
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 7.1e-104 380.9 275 68.7
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.6e-103 379.8 243 73.3
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.6e-103 378.3 243 71.2
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.0e-103 377.9 243 71.2
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.0e-102 377.1 243 71.2
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 2.3e-102 375.9 253 71.1
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 3.9e-102 375.2 239 71.1
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 6.9e-99 364.4 240 71.7
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 5.8e-98 361.3 244 74.2
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 8.4e-97 357.5 208 79.8
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 2.4e-96 355.9 327 57.2
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.0e-94 350.5 204 80.4
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 4.8e-92 341.7 205 80.5
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 6.2e-92 341.3 243 67.5
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 9.0e-91 337.4 208 75.5
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.2e-87 327.0 252 60.7
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 3.0e-86 322.4 279 55.9
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.6e-85 318.2 300 56.7
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.8e-84 315.1 243 65.4
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 6.9e-83 311.2 250 57.2
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.5e-82 310.1 243 62.1
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 1.6e-79 300.1 213 70.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 3.2e-72 275.8 316 46.2
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 2.0e-66 256.5 249 51.4
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.3e-62 243.0 247 51.4
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 6.9e-59 231.5 339 44.0
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.5e-58 228.8 250 48.4
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.2e-55 220.7 146 74.0
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 3.9e-54 215.7 110 87.3
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 1.1e-53 214.2 239 46.4
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 9.7e-53 211.1 253 41.9
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.7e-49 200.3 125 77.6
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 3.7e-44 182.6 123 69.9
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.7e-39 165.6 83 86.7
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 3.4e-37 159.5 96 77.1
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.1e-27 125.9 83 74.7
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.1e-27 125.9 83 74.7
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 7.2e-24 115.2 59 86.4
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.1e-23 112.1 75 74.7
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 8.3e-20 101.7 139 45.3
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 8.6e-17 91.7 69 66.7
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 2.5e-16 90.1 122 44.3
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.2e-13 81.3 49 71.4
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 5.8e-13 79.0 49 69.4
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 5.8e-13 79.0 49 69.4
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.1e-11 74.7 101 39.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 2.7e-10 70.1 43 67.4
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 3.0e-09 66.6 38 73.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.3e-08 62.8 65 46.2
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 7.3e-08 62.0 87 40.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 9.5e-08 61.6 73 45.2
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.2e-07 61.2 38 65.8
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.6e-07 59.7 73 41.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.7e-07 59.3 77 40.3
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 6.2e-07 58.9 70 40.0
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 8.0e-07 58.5 79 40.5
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 8.0e-07 58.5 79 40.5
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 8.0e-07 58.5 87 36.8
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 8.0e-07 58.5 81 39.5
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.1e-06 58.2 75 42.7
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.1e-06 58.2 80 37.5
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 1.4e-06 57.8 76 40.8
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.4e-06 57.8 68 39.7
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.4e-06 57.8 96 38.5
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.4e-06 57.8 76 42.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-06 57.4 79 40.5
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.8e-06 57.4 58 44.8
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 2.3e-06 57.0 81 38.3
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 2.3e-06 57.0 70 44.3
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.3e-06 57.0 77 42.9
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 3.1e-06 56.6 75 37.3
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 3.1e-06 56.6 72 43.1
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.1e-06 56.6 58 46.6
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 4.0e-06 56.2 58 46.6
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 5.2e-06 55.8 55 47.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 6.8e-06 55.5 75 40.0
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 6.8e-06 55.5 73 41.1
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 8.9e-06 55.1 72 41.7


User provided reference genes

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