Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 0.0e+00 1184.5 586 100.0
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.3e-239 833.2 542 75.1
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 2.3e-233 812.4 529 77.9
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 1.1e-227 793.5 536 72.9
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.2e-226 790.0 577 70.2
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 8.2e-223 777.3 536 72.0
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.0e-221 772.7 574 68.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 4.5e-221 771.5 586 68.4
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 4.5e-221 771.5 531 73.1
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.0e-217 760.4 593 66.3
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.8e-217 759.6 579 67.7
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 2.3e-217 759.2 589 66.2
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 6.7e-217 757.7 540 70.7
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 9.7e-216 753.8 534 70.8
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 2.8e-215 752.3 584 66.3
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 8.2e-215 750.7 534 71.3
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 4.1e-214 748.4 532 70.7
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 6.9e-214 747.7 534 70.4
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.2e-213 746.9 541 69.1
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 6.5e-212 741.1 549 68.1
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 4.2e-211 738.4 575 66.4
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 9.4e-211 737.3 586 65.9
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.1e-210 736.1 572 65.4
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 6.1e-210 734.6 536 67.7
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 4.4e-208 728.4 563 66.8
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 5.7e-208 728.0 531 67.6
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 7.4e-208 727.6 576 64.1
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 7.4e-208 727.6 594 63.5
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 2.4e-206 722.6 572 64.2
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 4.5e-205 718.4 583 64.2
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 5.9e-205 718.0 569 64.9
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.3e-204 716.8 532 66.7
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 3.8e-204 715.3 585 61.9
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 3.2e-203 712.2 573 63.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 5.5e-203 711.4 577 63.1
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.2e-202 710.3 531 67.2
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.8e-201 706.4 536 66.0
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 4.0e-201 705.3 579 62.5
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 4.4e-200 701.8 579 62.9
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.3e-199 700.3 578 61.8
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.7e-199 699.9 545 66.2
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.8e-199 699.1 538 65.6
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.8e-199 698.4 545 66.1
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.8e-198 696.4 590 62.5
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.8e-198 696.4 580 61.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.6e-197 693.3 536 65.1
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.0e-196 690.6 549 64.8
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 1.7e-196 689.9 580 61.9
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 2.2e-196 689.5 579 61.8
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 2.2e-196 689.5 580 62.1
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 6.5e-196 688.0 542 64.8
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 5.5e-195 684.9 542 64.2
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.4e-195 684.1 568 63.7
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.2e-194 683.7 538 63.9
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.2e-194 683.7 565 61.4
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 8.0e-194 681.0 551 63.5
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.0e-193 680.6 573 62.0
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.4e-193 680.2 547 63.8
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 6.8e-193 677.9 592 60.0
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 6.8e-193 677.9 592 60.0
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.4e-190 670.2 587 59.6
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 4.1e-190 668.7 629 57.7
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 3.2e-187 659.1 443 73.4
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 3.2e-187 659.1 540 62.2
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 4.2e-187 658.7 538 63.6
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 7.2e-187 657.9 583 60.2
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.6e-186 656.8 554 62.5
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 3.6e-186 655.6 584 59.8
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.3e-185 652.9 631 56.6
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.0e-185 652.1 537 62.8
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 5.7e-184 648.3 588 58.3
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 4.9e-183 645.2 498 67.9
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 6.3e-183 644.8 476 66.8
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.2e-181 640.6 544 61.0
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 2.0e-181 639.8 539 61.2
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 2.9e-180 636.0 510 65.3
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.8e-178 629.4 548 61.7
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.8e-177 626.7 587 59.3
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.7e-173 612.8 596 55.7
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 1.1e-166 590.9 560 56.1
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 8.6e-156 554.7 537 55.1
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 5.8e-152 542.0 392 69.4
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 3.5e-149 532.7 541 53.2
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 3.6e-146 522.7 535 52.1
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 4.0e-145 519.2 573 48.0
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 1.4e-142 510.8 407 63.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 2.1e-138 496.9 559 52.8
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.8e-138 495.7 575 47.1
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 2.1e-133 480.3 411 58.9
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.5e-131 474.2 401 62.6
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.8e-130 469.2 401 61.8
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 6.2e-130 468.8 401 61.6
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.2e-128 464.5 359 65.5
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 6.4e-127 458.8 350 66.9
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 8.7e-124 448.4 559 44.9
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 1.0e-119 434.9 339 66.4
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.0e-112 410.6 364 56.9
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.2e-109 401.4 313 65.2
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.9e-108 396.4 333 60.4
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 3.0e-100 370.2 612 38.1
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 6.3e-98 362.5 550 41.3
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.8e-90 337.0 615 37.6
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.1e-89 333.6 341 52.5
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.0e-88 330.9 320 55.6
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 5.3e-81 306.2 556 36.3
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.7e-75 286.2 237 62.4
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 9.8e-75 285.4 559 34.3
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.7e-66 256.9 206 65.0
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 9.5e-62 242.3 163 71.2
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 7.5e-59 232.6 195 59.0
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 8.3e-58 229.2 204 57.8
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 5.4e-57 226.5 174 65.5
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 5.8e-51 206.5 149 67.8
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 1.7e-50 204.9 486 31.1
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 5.6e-46 189.9 168 55.4
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 6.4e-42 176.4 163 57.1
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 9.2e-33 146.0 109 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.0e-31 142.5 164 46.3
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 4.3e-30 137.1 103 67.0
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.6e-21 108.6 103 58.3
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 2.5e-14 84.7 60 66.7
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 7.4e-14 83.2 58 67.2
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.4e-12 78.2 77 57.1
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.5e-11 73.9 51 62.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.9e-10 71.2 51 60.8
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 4.6e-08 63.9 41 70.7
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 9.6e-06 56.2 72 41.7


User provided reference genes

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