Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 1.1e-187 659.8 339 100.0
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 1.9e-123 446.4 344 70.1
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 3.3e-123 445.7 344 70.6
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 3.3e-115 419.1 350 64.9
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.1e-113 414.1 350 65.1
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 3.1e-113 412.5 358 64.5
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 6.8e-113 411.4 364 63.5
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 2.0e-112 409.8 346 62.7
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 3.7e-111 405.6 344 64.0
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 4.9e-111 405.2 345 64.3
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 5.4e-110 401.7 343 64.1
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 6.6e-108 394.8 345 61.7
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.1e-107 394.0 348 62.6
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 7.3e-107 391.3 338 63.0
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.6e-106 390.2 337 62.0
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 2.1e-106 389.8 350 62.0
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 2.1e-106 389.8 338 62.7
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 8.1e-106 387.9 337 62.6
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.1e-105 387.5 346 62.4
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.4e-105 387.1 338 62.1
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 6.8e-105 384.8 345 61.7
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 4.4e-104 382.1 355 59.4
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.7e-103 380.2 345 62.6
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 8.4e-103 377.9 338 61.2
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.2e-101 374.0 349 61.9
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 4.6e-101 372.1 336 61.0
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 7.8e-101 371.3 349 57.9
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 5.1e-100 368.6 342 59.1
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 9.6e-99 364.4 351 59.8
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 4.7e-98 362.1 344 59.6
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 1.8e-97 360.1 340 58.2
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 3.1e-97 359.4 342 58.8
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 3.1e-97 359.4 340 58.5
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 5.3e-97 358.6 326 62.3
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 2.0e-96 356.7 346 57.2
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 5.8e-96 355.1 346 58.1
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 7.6e-96 354.8 340 57.9
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 1.4e-94 350.5 336 58.0
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 4.2e-94 349.0 340 55.6
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 7.1e-94 348.2 348 54.9
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 7.1e-94 348.2 345 56.5
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 7.1e-94 348.2 343 55.4
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 1.2e-93 347.4 349 55.6
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.2e-93 347.4 347 57.6
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 7.8e-93 344.7 344 56.4
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.0e-92 344.4 298 59.7
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.7e-92 343.6 347 56.8
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 2.3e-92 343.2 339 56.3
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 3.0e-92 342.8 343 55.4
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 3.9e-92 342.4 342 55.8
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.9e-92 342.4 344 55.8
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 3.9e-92 342.4 338 55.3
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 3.9e-92 342.4 317 59.6
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 5.1e-92 342.0 338 55.6
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 8.7e-92 341.3 343 55.7
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.1e-91 340.9 349 53.9
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 1.9e-91 340.1 352 54.8
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 3.3e-91 339.3 352 55.4
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 4.3e-91 339.0 344 55.8
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 9.6e-91 337.8 309 58.3
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 1.6e-90 337.0 351 55.6
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 2.1e-90 336.7 337 54.9
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 1.1e-89 334.3 342 55.6
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 1.8e-89 333.6 351 53.0
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 3.1e-89 332.8 350 55.7
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 6.9e-89 331.6 343 53.9
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 4.5e-88 328.9 342 55.6
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 5.8e-88 328.6 342 53.8
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 4.9e-87 325.5 341 55.1
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.4e-86 323.9 338 54.1
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 5.6e-83 312.0 295 55.3
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 7.4e-83 311.6 344 53.8
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 1.6e-82 310.5 307 56.4
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 4.8e-82 308.9 315 53.7
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 1.1e-81 307.8 398 47.5
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 1.8e-81 307.0 341 53.1
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 2.4e-81 306.6 294 56.5
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 9.0e-81 304.7 390 46.9
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 9.0e-81 304.7 341 50.1
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 1.5e-80 303.9 341 49.9
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 3.4e-80 302.8 340 52.1
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 7.1e-78 295.0 358 49.7
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.8e-76 290.4 325 48.9
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 3.3e-75 286.2 291 50.2
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 6.5e-71 271.9 348 48.0
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 1.4e-70 270.8 339 47.5
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 6.0e-69 265.4 286 49.0
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 4.2e-62 242.7 338 41.7
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 4.6e-61 239.2 244 49.2
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.2e-58 230.3 343 44.6
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 5.5e-54 215.7 297 42.4
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 1.4e-52 211.1 281 46.3
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 6.3e-50 202.2 218 50.5
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 2.2e-47 193.7 207 51.7
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.4e-41 173.7 139 68.3
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 8.8e-36 155.2 244 42.2
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 2.3e-28 130.6 96 62.5
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 4.4e-27 126.3 288 30.2
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.7e-26 124.4 134 56.7
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 4.8e-26 122.9 140 50.0
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 2.5e-22 110.5 117 54.7
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 1.2e-21 108.2 298 27.5
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 4.4e-19 99.8 121 48.8
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-18 95.9 297 23.9
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 2.8e-13 80.5 98 44.9
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 6.8e-12 75.9 64 59.4
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 3.4e-11 73.6 73 60.3


User provided reference genes

Program Settings