Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.6e-116 421.8 241 100.0
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 6.2e-100 367.9 239 87.9
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.3e-99 365.9 241 80.9
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 8.9e-99 364.0 239 87.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.9e-96 356.3 237 79.7
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.0e-95 352.8 239 85.8
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 6.0e-95 351.3 241 82.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 6.6e-94 347.8 239 77.4
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 8.6e-94 347.4 239 84.9
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.9e-93 346.3 241 83.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 5.6e-93 344.7 240 75.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 7.3e-93 344.4 239 84.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 83.4
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 83.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 3.6e-92 342.0 241 82.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 3.6e-92 342.0 241 81.7
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 4.7e-92 341.7 238 81.5
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 8.1e-92 340.9 239 82.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.1e-92 340.9 242 74.0
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.8e-91 339.7 241 80.9
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-91 339.7 241 75.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.8e-91 339.7 240 82.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.3e-91 339.3 239 84.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 3.1e-91 339.0 240 80.4
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 5.2e-91 338.2 242 78.5
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 6.8e-91 337.8 241 80.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.8e-91 337.8 206 84.5
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.8e-91 337.8 242 77.7
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.2e-90 337.0 239 83.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.2e-90 337.0 236 80.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.5e-90 336.7 238 80.3
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.0e-90 336.3 241 82.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.0e-90 336.3 239 79.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 80.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 80.9
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 76.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 9.8e-90 334.0 240 75.0
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 80.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 80.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.3e-89 333.6 240 75.0
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 76.4
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-89 332.8 239 74.5
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.2e-89 332.8 238 79.8
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-89 332.4 241 79.3
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.7e-89 332.0 242 76.4
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.9e-89 331.6 240 75.4
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.9e-89 331.6 239 74.1
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.4e-89 331.3 241 80.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 8.3e-89 330.9 236 80.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.4e-88 330.1 201 86.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.4e-88 330.1 242 76.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.4e-88 330.1 241 80.1
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.4e-88 330.1 243 79.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.9e-88 329.7 245 74.3
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.9e-88 329.7 240 72.9
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.4e-88 329.3 241 80.5
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.2e-88 328.9 240 74.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 5.4e-88 328.2 241 79.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.4e-88 328.2 240 74.2
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.4e-88 328.2 241 79.3
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 9.2e-88 327.4 228 82.9
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.6e-87 326.6 240 73.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.6e-87 326.6 237 79.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.7e-87 325.9 226 85.0
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 3.5e-87 325.5 236 78.8
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.0e-87 324.7 240 72.9
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 6.0e-87 324.7 241 75.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.0e-86 323.9 241 70.1
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.7e-86 323.2 240 77.9
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.7e-86 323.2 194 87.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.0e-86 322.4 240 71.7
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.0e-86 322.4 240 72.9
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 3.0e-86 322.4 241 71.0
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 5.1e-86 321.6 244 77.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.1e-86 321.6 239 77.4
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 6.6e-86 321.2 245 68.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.9e-85 319.7 233 78.1
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-85 319.7 241 73.9
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 4.3e-85 318.5 250 70.8
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.6e-85 318.2 241 77.2
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.3e-85 317.8 241 73.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 9.5e-85 317.4 199 83.4
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 9.5e-85 317.4 241 75.1
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.6e-84 315.5 249 69.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.7e-84 315.1 204 79.4
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.7e-84 315.1 242 73.1
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.7e-84 315.1 242 73.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 75.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.8e-83 313.2 242 75.2
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.3e-83 312.8 202 80.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.0e-82 309.7 241 76.3
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.4e-82 308.9 206 80.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 5.8e-82 308.1 242 74.4
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 5.8e-82 308.1 242 74.4
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.2e-81 306.2 202 77.7
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 241 67.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.1e-80 302.0 204 77.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 5.4e-80 301.6 241 67.6
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.1e-80 301.2 204 77.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 9.2e-80 300.8 242 71.9
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 9.2e-80 300.8 198 78.8
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.2e-79 300.4 226 76.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 6.0e-79 298.1 227 73.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.3e-78 297.0 242 65.7
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-78 296.6 241 65.6
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.0e-78 295.8 241 65.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.0e-78 295.8 242 65.7
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 5.1e-78 295.0 241 73.9
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.5e-77 293.5 242 65.3
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.5e-77 292.7 210 81.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.3e-77 292.0 209 71.8
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 7.3e-77 291.2 182 81.9
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.2e-76 290.4 242 64.9
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.6e-76 288.9 242 64.5
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.4e-75 287.0 209 70.8
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.4e-75 287.0 209 70.8
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.4e-75 287.0 208 71.6
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 3.1e-75 285.8 209 70.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 3.1e-75 285.8 209 70.8
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.0e-74 283.1 243 68.3
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.6e-69 265.0 178 75.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.6e-68 263.5 238 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.8e-68 262.7 195 69.2
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 4.8e-68 261.9 227 59.9
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.7e-63 246.1 195 63.6
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.4e-59 233.8 151 78.8
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 9.9e-58 227.6 208 63.5
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 6.0e-55 218.4 243 53.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 3.0e-54 216.1 190 62.1
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.9e-48 196.8 171 65.5
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-47 193.7 132 75.0
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 4.3e-45 185.7 108 82.4
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.2e-40 169.1 241 48.1
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.6e-39 165.6 176 50.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 6.3e-36 155.2 173 49.1
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 4.1e-35 152.5 102 72.5
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.1e-29 134.4 188 39.9
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.8e-27 127.1 129 56.6
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-24 117.1 86 67.4
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.1e-19 101.3 91 72.5
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.0e-17 94.7 183 31.1
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 3.8e-17 92.8 90 60.0
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.6e-15 86.3 55 76.4
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.0e-14 83.2 211 28.0
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 3.2e-08 63.2 81 49.4
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.4e-06 57.8 82 46.3


User provided reference genes

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