Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.8e-165 585.9 297 100.0
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 2.3e-120 436.0 293 73.7
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 2.6e-116 422.5 293 71.7
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 6.4e-115 417.9 292 71.9
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.3e-115 417.5 292 72.3
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 3.2e-114 415.6 294 71.8
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 4.6e-113 411.8 293 71.3
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 5.6e-111 404.8 291 70.8
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 7.3e-111 404.4 292 69.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.6e-110 403.3 296 70.6
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.1e-110 402.9 290 69.3
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 3.6e-110 402.1 291 69.8
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.7e-110 401.7 293 69.6
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 6.2e-110 401.4 288 70.1
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 8.1e-110 401.0 293 69.3
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.1e-110 401.0 293 69.6
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 8.1e-110 401.0 291 68.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 5.2e-109 398.3 295 69.5
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 5.8e-108 394.8 292 68.8
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 7.6e-108 394.4 291 67.7
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 9.9e-108 394.0 290 67.6
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.7e-107 393.3 290 67.6
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 2.2e-107 392.9 292 66.4
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 2.2e-107 392.9 290 67.9
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.8e-107 392.1 292 67.5
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 3.8e-107 392.1 290 65.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 3.8e-107 392.1 291 68.7
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.4e-106 390.2 291 66.7
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.4e-106 390.2 293 67.9
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.9e-106 389.8 290 66.9
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 3.2e-106 389.0 292 68.5
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 4.2e-106 388.7 292 67.1
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 9.2e-106 387.5 292 67.1
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 2.7e-105 386.0 292 68.2
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 3.5e-105 385.6 292 67.8
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.0e-104 384.0 289 65.4
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 3.0e-104 382.5 292 67.8
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 3.9e-104 382.1 291 66.7
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 6.6e-104 381.3 305 65.2
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 6.6e-104 381.3 292 67.8
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 6.6e-104 381.3 292 66.8
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.7e-104 380.9 335 60.3
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.5e-103 379.4 290 64.8
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 2.5e-103 379.4 293 65.5
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 4.3e-103 378.6 289 66.1
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 7.3e-103 377.9 292 65.8
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 9.6e-103 377.5 291 67.7
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.2e-102 377.1 316 61.7
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 7.6e-100 367.9 292 64.4
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 2.2e-99 366.3 292 65.8
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 2.2e-99 366.3 294 63.6
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.9e-99 365.9 290 62.8
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.1e-98 364.0 282 70.2
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.4e-98 363.6 287 62.4
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.4e-98 363.6 287 62.4
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.9e-98 363.2 293 62.1
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 5.4e-98 361.7 290 65.9
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.5e-97 359.0 289 62.3
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 3.5e-97 359.0 290 65.2
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 6.0e-97 358.2 292 63.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.0e-96 357.5 294 63.6
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.0e-96 357.5 294 63.6
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.1e-96 355.1 293 62.5
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.1e-95 354.0 306 59.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 9.6e-95 350.9 286 63.3
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 4.0e-93 345.5 288 62.8
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.5e-92 343.6 292 61.3
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 5.8e-92 341.7 297 60.3
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 4.2e-90 335.5 294 60.9
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 3.0e-88 329.3 240 69.6
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 5.6e-87 325.1 291 59.1
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.6e-86 323.6 291 58.8
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 4.8e-86 322.0 293 58.4
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.5e-84 317.0 291 57.4
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.1e-82 310.8 289 55.7
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 6.0e-81 305.1 295 56.3
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 7.9e-81 304.7 290 56.2
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 7.9e-81 304.7 295 56.3
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.3e-80 303.9 295 56.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.3e-80 303.1 288 57.3
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.3e-80 303.1 288 57.3
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 3.9e-80 302.4 289 56.4
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 3.9e-80 302.4 294 56.5
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.1e-79 300.8 292 52.7
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 4.3e-79 298.9 288 54.9
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 2.1e-78 296.6 287 55.1
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.8e-78 296.2 290 56.2
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.4e-77 293.1 288 54.9
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 5.3e-77 292.0 274 57.3
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.9e-75 286.2 288 54.2
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.8e-75 285.8 261 59.4
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.1e-74 284.3 291 51.9
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 3.0e-72 276.2 288 51.7
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 2.2e-70 270.0 288 52.8
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 2.8e-70 269.6 288 52.1
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 8.5e-67 258.1 288 50.3
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.7e-62 242.7 178 70.2
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 2.0e-60 236.9 284 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 8.5e-59 231.5 312 44.6
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.0e-56 224.6 303 42.6
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 8.8e-56 221.5 205 59.5
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 5.7e-55 218.8 291 44.0
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 2.5e-50 203.4 167 66.5
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 4.7e-49 199.1 375 36.3
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 2.5e-42 176.8 174 57.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 2.0e-39 167.2 162 54.3
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.3e-38 164.5 278 36.7
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 4.8e-38 162.5 303 37.0
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.2e-34 149.4 147 53.1
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.2e-33 147.9 168 47.6
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 8.3e-30 135.2 107 61.7
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 1.2e-28 131.3 150 47.3
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.3e-19 100.5 71 64.8
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 5.0e-19 99.4 133 46.6
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.5e-18 97.8 59 69.5
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 4.0e-16 89.7 115 44.3
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 8.9e-16 88.6 72 59.7
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 2.0e-15 87.4 114 41.2
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.6e-12 76.3 58 67.2
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 2.5e-10 70.5 59 67.8
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 2.2e-06 57.4 53 52.8


User provided reference genes

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