Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 8.7e-194 681.4 834 100.0
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 9.2e-119 432.2 811 78.9
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 5.6e-116 422.9 816 84.4
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 1.1e-111 408.7 833 84.0
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 3.2e-111 407.1 830 85.1
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 9.2e-111 405.6 805 85.6
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 1.2e-110 405.2 812 85.2
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.9e-109 400.2 806 76.2
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 8.6e-109 399.1 804 78.6
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 5.6e-108 396.4 830 83.1
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 8.1e-107 392.5 795 84.7
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 2.3e-106 391.0 813 84.0
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 2.3e-106 391.0 801 82.4
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 7.6e-105 386.0 791 84.7
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 8.4e-104 382.5 810 83.7
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 6.0e-102 376.3 794 78.8
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 1.7e-101 374.8 790 82.7
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 1.5e-100 371.7 813 83.5
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 2.8e-99 367.5 831 81.6
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.1e-98 365.5 836 82.1
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 5.2e-98 363.2 836 81.7
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 8.9e-98 362.5 818 82.2
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 2.0e-97 361.3 814 82.4
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 2.6e-97 360.9 783 78.9
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 9.9e-97 359.0 806 83.7
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.9e-95 354.8 821 81.6
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 1.9e-95 354.8 826 81.1
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 2.4e-95 354.4 793 83.4
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 5.4e-95 353.2 806 82.8
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 1.3e-93 348.6 807 81.7
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.1e-92 345.5 812 82.0
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 1.5e-92 345.1 818 74.6
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.5e-92 344.4 802 76.9
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 1.8e-90 338.2 803 82.3
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 5.3e-90 336.7 821 65.8
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 1.2e-89 335.5 764 84.6
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 1.2e-89 335.5 787 76.6
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 2.6e-89 334.3 813 79.8
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.4e-89 334.0 812 71.8
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 5.8e-89 333.2 797 82.7
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 2.9e-88 330.9 790 73.0
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 6.4e-88 329.7 798 81.6
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 5.4e-87 326.6 747 62.8
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.4e-87 326.6 805 64.5
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.6e-86 325.1 794 65.5
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.6e-86 323.6 804 70.8
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 4.6e-86 323.6 786 72.4
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 6.0e-86 323.2 821 68.7
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 3.0e-85 320.9 786 81.9
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 1.9e-84 318.2 812 74.4
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 3.3e-84 317.4 833 66.9
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 2.1e-83 314.7 804 72.3
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 2.8e-83 314.3 800 80.8
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 6.2e-83 313.2 808 80.1
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 5.3e-82 310.1 803 64.9
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 6.9e-82 309.7 787 79.5
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 9.0e-82 309.3 784 74.2
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 3.4e-81 307.4 784 65.2
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 7.6e-81 306.2 798 80.3
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.7e-80 305.1 870 52.8
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 2.2e-80 304.7 828 78.6
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 3.8e-80 303.9 873 67.4
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 1.1e-79 302.4 797 80.8
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 4.2e-79 300.4 747 84.9
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 2.8e-75 287.7 749 82.6
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 2.8e-75 287.7 790 63.5
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 5.3e-74 283.5 786 64.6
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 5.3e-74 283.5 787 64.5
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 5.3e-74 283.5 787 64.5
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 9.0e-74 282.7 797 70.1
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.6e-73 281.2 351 80.6
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 2.9e-72 277.7 787 70.0
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 2.7e-70 271.2 785 78.0
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.1e-69 266.9 179 72.6
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 2.5e-68 264.6 335 80.9
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 2.1e-67 261.5 816 69.4
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 1.4e-66 258.8 327 80.7
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.4e-66 258.8 356 76.7
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.5e-65 255.4 163 72.4
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 7.6e-65 253.1 674 90.9
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 2.2e-64 251.5 163 71.8
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 1.9e-63 248.4 162 71.6
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 4.2e-63 247.3 163 71.8
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 4.6e-62 243.8 337 76.3
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.5e-60 238.8 165 68.5
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 1.5e-60 238.8 163 67.5
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 2.2e-59 235.0 779 77.8
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 4.1e-58 230.7 149 70.5
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 5.3e-58 230.3 146 75.3
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 4.5e-57 227.3 807 73.2
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 1.3e-56 225.7 716 83.4
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 1.1e-55 222.6 770 73.5
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 9.4e-55 219.5 332 75.0
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 3.6e-54 217.6 332 73.8
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.1e-52 212.6 156 66.0
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.6e-52 211.5 156 66.0
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 7.4e-52 209.9 161 57.8
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 6.3e-51 206.8 159 56.6
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.8e-50 205.3 161 59.0
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.2e-49 202.6 148 64.9
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 1.3e-48 199.1 161 57.1
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.5e-39 169.1 560 36.2
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 2.1e-38 165.2 128 63.3
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 4.0e-37 161.0 115 64.3
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 1.2e-33 149.4 131 57.3
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 1.3e-32 146.0 109 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 1.7e-32 145.6 121 56.2
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 5.5e-31 140.6 112 61.6
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 5.5e-31 140.6 142 41.5
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 6.1e-30 137.1 239 67.4
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 2.6e-28 131.7 120 54.2
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 9.1e-26 123.2 67 80.6
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 7.7e-25 120.2 99 56.6
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 3.8e-24 117.9 119 49.6
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.1e-23 116.3 114 50.9
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.9e-23 115.5 85 63.5
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 7.2e-23 113.6 98 54.1
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.1e-18 99.8 84 58.3
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.4e-18 99.4 87 55.2
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 4.1e-18 97.8 81 50.6
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 9.2e-18 96.7 132 45.5
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.7e-16 92.4 98 46.9
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 7.3e-15 87.0 66 62.1
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.2e-13 80.9 48 79.2


User provided reference genes

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