Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.2e-291 1005.7 510 100.0
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.6e-166 589.0 493 62.3
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 6.3e-163 578.2 527 58.3
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.9e-143 513.5 498 55.2
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 4.1e-130 469.2 497 50.7
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 9.0e-125 451.4 509 50.3
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 7.1e-122 441.8 510 49.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 3.3e-119 433.0 507 48.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.6e-118 430.6 499 46.9
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.0e-116 423.7 503 46.7
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 6.4e-115 418.7 495 46.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 7.1e-114 415.2 500 47.2
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.6e-113 414.1 500 45.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.7e-113 413.3 516 45.2
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.1e-111 407.9 519 46.1
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.5e-111 406.8 499 44.9
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.6e-110 404.1 502 46.0
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.7e-110 402.9 536 42.5
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 6.9e-109 398.7 507 41.2
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.4e-106 390.2 498 44.8
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 3.2e-106 389.8 511 43.8
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.6e-105 387.5 503 44.9
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.3e-104 383.6 495 43.4
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.5e-103 380.9 540 43.1
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.5e-103 380.2 499 45.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 2.5e-103 380.2 493 45.4
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 4.3e-103 379.4 499 45.5
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 4.3e-103 379.4 511 42.9
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.1e-102 377.1 502 41.8
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.7e-102 376.3 502 43.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 6.2e-102 375.6 502 43.4
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 3.1e-101 373.2 508 40.2
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 5.3e-101 372.5 486 44.0
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.5e-100 370.9 506 44.3
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 5.8e-100 369.0 314 57.3
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.9e-99 366.7 499 42.7
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.4e-99 365.2 502 42.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.9e-98 364.0 528 42.0
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-98 363.6 506 41.3
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.2e-98 363.2 495 43.2
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.2e-98 363.2 506 41.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.2e-98 362.8 506 41.3
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.6e-97 360.9 499 42.9
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.7e-97 360.1 506 41.1
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 6.0e-97 359.0 507 40.0
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.0e-96 358.2 508 41.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 5.1e-96 355.9 507 40.2
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.9e-95 354.0 495 41.6
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.7e-95 352.4 499 39.5
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.3e-94 351.3 496 40.1
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.3e-94 351.3 472 44.1
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.8e-94 350.1 471 42.7
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.1e-93 348.2 500 41.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.8e-93 347.4 511 41.5
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.9e-93 345.5 480 42.1
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.2e-92 344.7 496 41.9
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.3e-91 341.3 495 39.2
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.2e-91 340.5 516 39.5
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.9e-91 340.1 506 39.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.2e-90 336.7 503 41.0
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 4.2e-90 336.3 346 50.0
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.7e-89 333.6 502 41.0
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.6e-89 332.8 502 38.2
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 4.6e-89 332.8 483 42.7
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.8e-88 330.9 508 38.6
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.9e-88 329.7 522 41.0
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.9e-88 329.7 466 40.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 4.8e-86 322.8 496 38.3
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 2.6e-84 317.0 503 39.4
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 3.4e-84 316.6 502 38.6
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.3e-83 314.7 353 49.0
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 8.5e-83 312.0 503 38.8
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.9e-82 310.8 502 37.8
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 4.2e-82 309.7 510 39.4
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.5e-82 309.3 478 39.1
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.6e-81 307.8 495 37.8
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.0e-80 303.5 502 38.0
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.5e-79 301.2 492 38.4
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.0e-79 300.8 497 38.6
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.6e-79 300.4 502 36.1
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 3.7e-78 296.6 356 45.2
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.1e-77 295.0 262 56.9
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.1e-77 295.0 494 37.2
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 3.1e-77 293.5 356 45.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 2.0e-76 290.8 503 37.6
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 7.7e-76 288.9 491 38.5
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 9.4e-74 282.0 496 39.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.2e-73 281.6 326 49.4
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 5.2e-72 276.2 509 37.1
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 8.8e-72 275.4 492 34.8
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.5e-71 274.6 498 34.9
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 4.8e-70 269.6 339 45.1
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.4e-69 268.1 340 45.3
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 5.3e-69 266.2 501 36.5
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.2e-68 265.0 463 37.8
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.0e-64 251.9 467 38.3
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 9.7e-63 245.4 310 43.2
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 2.0e-60 237.7 498 30.7
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.8e-56 224.6 324 40.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.0e-56 223.8 561 29.2
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.6e-55 220.7 251 48.6
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.1e-53 212.2 354 36.4
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.2e-44 185.3 626 26.7
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-43 181.8 249 41.8
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.6e-35 152.5 117 60.7
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.1e-32 145.6 152 52.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 2.2e-30 137.9 107 65.4
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.1e-28 131.3 299 31.1
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.6e-25 120.6 162 43.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.0e-23 114.8 254 35.4
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.1e-21 109.0 127 51.2
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.9e-21 108.2 101 48.5
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.7e-19 101.7 80 58.8
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.0e-19 100.9 158 44.9
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.1e-18 99.0 74 55.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.9e-18 98.2 75 57.3
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.3e-18 97.4 68 58.8
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.3e-18 97.4 595 24.0
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.1e-16 92.4 69 55.1
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.8e-16 91.7 75 52.0
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.1e-16 90.9 63 60.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 5.2e-16 90.1 68 58.8
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.6e-15 87.8 63 57.1
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 9.9e-15 85.9 63 57.1
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.3e-14 85.5 69 52.2
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 3.8e-14 84.0 85 45.9
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-13 82.4 206 32.0
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-13 82.0 61 57.4
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 9.2e-13 79.3 77 49.4
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.2e-12 79.0 80 48.8
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 3.5e-12 77.4 77 48.1
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 4.6e-12 77.0 63 50.8
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-11 75.9 73 47.9
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.7e-11 72.8 71 46.5
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.1e-10 72.4 72 47.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.5e-10 71.2 65 46.2
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 3.3e-10 70.9 88 45.5
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.8e-09 67.0 77 39.0
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-08 65.5 62 46.8
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 9.0e-08 62.8 54 55.6
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.4e-07 60.8 47 55.3
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 7.6e-07 59.7 62 43.5
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.2e-06 58.2 112 33.9


User provided reference genes

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