Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 2182.1 1102 100.0
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1741.9 1100 78.5
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1704.9 1100 77.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1695.6 1100 76.9
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1650.2 1100 74.5
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1645.9 1100 74.3
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1640.2 1100 74.0
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1621.7 1096 74.7
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1612.0 1090 74.7
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1597.8 1105 72.6
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1595.5 1105 72.2
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1592.8 1105 73.0
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1587.4 1105 72.2
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1587.0 1105 71.9
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1585.9 1100 71.6
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1583.2 1100 71.6
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1579.7 1103 71.3
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1578.1 1100 71.4
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1577.0 1100 71.3
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1577.0 1102 70.7
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1575.5 1100 71.3
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1574.3 1104 71.0
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1573.5 1100 71.5
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1569.7 1105 70.9
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1568.9 1102 71.2
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1567.4 1104 72.0
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1562.0 1100 71.0
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1551.6 1098 70.0
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1550.0 1108 70.1
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1548.5 1107 69.6
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1545.0 1100 70.5
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1539.6 1099 69.6
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1538.9 1103 68.7
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1532.7 1103 70.2
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1522.7 1099 68.8
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1521.9 1100 69.5
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1519.2 1098 69.2
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1517.7 1101 67.6
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1504.6 1099 69.2
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1504.2 1100 69.0
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1501.9 1100 68.8
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1492.6 1102 67.9
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1485.3 1104 68.1
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1484.9 1098 67.9
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1480.7 1100 66.7
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1480.7 1099 68.4
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1477.6 1101 68.0
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1476.1 1101 68.1
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1476.1 1100 68.0
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1475.3 1101 67.8
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1474.5 1112 65.9
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1474.1 1100 67.5
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1473.4 1100 66.9
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1471.1 1101 67.3
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1460.3 1095 67.0
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1458.4 1099 67.5
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1452.6 1099 65.5
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1451.0 1110 66.8
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1448.7 1099 66.0
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1444.1 1100 65.3
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1441.0 1102 66.1
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1431.0 1099 65.5
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1430.2 1100 65.5
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1426.0 1104 65.8
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1417.1 1100 64.0
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1414.4 1100 65.1
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1412.5 1105 65.0
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1411.0 1103 65.5
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1399.8 1112 64.0
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1396.7 1115 63.9
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1374.8 1104 63.4
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1367.8 1101 63.3
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1364.4 1101 63.1
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1361.7 1106 63.2
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1360.1 1101 63.1
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1359.4 1105 64.6
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1357.8 1106 62.6
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1357.8 1105 62.9
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1355.1 1105 62.3
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1354.7 1106 62.2
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1354.7 1106 62.2
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1352.8 1104 62.6
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1331.6 1100 61.5
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1331.6 1099 61.5
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1326.2 1100 63.1
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1317.8 1104 62.4
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1312.0 1133 59.7
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1306.2 964 67.3
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1267.3 1058 62.9
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1248.4 1108 57.5
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1224.9 1107 56.0
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1219.5 864 71.2
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1198.0 1118 55.7
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1191.8 1280 51.1
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1165.6 1098 56.1
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1125.2 1100 57.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1123.6 755 74.6
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 2.7e-304 1048.9 722 71.1
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 1.8e-292 1009.6 1109 51.6
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 1.6e-275 953.4 679 68.6
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.0e-274 948.3 1023 49.7
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 5.1e-226 788.9 1106 41.9
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 4.6e-219 765.8 1130 39.4
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 3.3e-217 759.6 800 52.2
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 6.5e-213 745.3 1136 39.8
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 4.8e-208 729.2 1099 39.5
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 8.8e-178 628.6 626 50.2
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.7e-144 518.1 357 73.9
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 5.8e-137 493.0 1311 30.4
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 1.6e-134 485.0 460 56.3
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 1.3e-83 315.8 304 54.6
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 8.8e-77 293.1 1244 26.6
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.3e-75 289.3 196 77.6
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 6.8e-69 266.9 670 31.9
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 9.1e-66 256.5 227 54.6
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 6.3e-59 233.8 234 53.0
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 4.1e-58 231.1 149 71.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.7e-57 228.4 167 73.1
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 4.5e-57 227.6 225 53.8
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.4e-45 189.5 1087 23.9
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 8.9e-45 186.8 147 68.7
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 1.7e-40 172.6 130 67.7
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.9e-39 169.1 139 64.7
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 5.6e-39 167.5 1218 24.6
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.8e-37 162.5 121 67.8
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 7.1e-34 150.6 136 55.9


User provided reference genes

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