Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G072314 Manihot esculenta HOM05D007305 ORTHO05D009886 1.5e-127 459.5 232 100.0
Manes.15G035050 Manihot esculenta HOM05D007305 ORTHO05D009886 4.0e-104 381.7 255 80.0
Manes.09G001301 Manihot esculenta HOM05D007305 ORTHO05D009886 1.1e-77 293.9 234 70.9
Manes.09G019650 Manihot esculenta HOM05D007305 ORTHO05D009886 2.7e-76 289.3 210 73.8
Manes.06G030066 Manihot esculenta HOM05D007305 ORTHO05D009886 4.3e-74 282.0 227 71.4
Manes.13G089260 Manihot esculenta HOM05D007305 ORTHO05D009886 2.5e-66 256.1 206 68.4
Manes.02G211261 Manihot esculenta HOM05D007305 ORTHO05D009886 4.3e-66 255.4 202 70.8
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 4.4e-63 245.4 234 54.3
Sabra16G0035300 Salix brachista HOM05D007305 ORTHO05D009886 4.4e-63 245.4 234 54.3
Sabra17G0125400 Salix brachista HOM05D007305 ORTHO05D009886 4.4e-63 245.4 234 54.3
Sabra04G0080000 Salix brachista HOM05D007305 ORTHO05D009886 5.4e-61 238.4 233 54.1
Sabra06G0016700 Salix brachista HOM05D000027 ORTHO05D000066 9.2e-61 237.7 232 53.4
Sabra11G0081600 Salix brachista HOM05D007305 ORTHO05D009886 6.0e-52 208.4 224 54.9
CANSAT35G1669 Cannabis sativa HOM05D007305 ORTHO05D009886 2.1e-49 199.9 161 63.4
Manes.06G147450 Manihot esculenta HOM05D007305 ORTHO05D009886 8.1e-49 198.0 162 69.1
Manes.15G058801 Manihot esculenta HOM05D007305 ORTHO05D009886 1.4e-48 197.2 162 66.7
Sabra07G0082100 Salix brachista HOM05D007305 ORTHO05D009886 5.3e-40 168.7 176 52.8
SHI11625 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-40 167.9 188 43.1
SHI35106 Sapria himalayana HOM05D007305 ORTHO05D009886 9.9e-39 164.5 202 48.0
Sabra18G0102700 Salix brachista HOM05D007305 ORTHO05D009886 1.7e-38 163.7 171 52.0
Manes.01G039012 Manihot esculenta HOM05D007305 ORTHO05D009886 3.9e-35 152.5 83 95.2
Manes.13G079525 Manihot esculenta HOM05D007305 ORTHO05D009886 1.1e-34 151.0 124 70.2
Cpa.g.sc74.28 Carica papaya HOM05D007305 ORTHO05D009886 5.6e-34 148.7 159 52.2
Manes.18G104116 Manihot esculenta HOM05D007305 ORTHO05D009886 9.6e-34 147.9 83 90.4
Sed0002096 Sechium edule HOM05D007305 ORTHO05D009886 6.5e-30 135.2 217 37.8
Thecc.04G308500 Theobroma cacao HOM05D007305 ORTHO05D009886 1.0e-27 127.9 92 65.2
TWI79G0335 Tripterygium wilfordii HOM05D007305 ORTHO05D009886 1.3e-27 127.5 210 35.2
SHI27433 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-27 125.2 156 41.0
Gohir.D03G068902 Gossypium hirsutum HOM05D007305 ORTHO05D009886 2.5e-26 123.2 174 42.5
SHI31578 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-26 123.2 105 55.2
Manes.15G168650 Manihot esculenta HOM05D007305 ORTHO05D009886 3.3e-26 122.9 83 81.9
SHI30681 Sapria himalayana HOM05D000002 ORTHO05D000001 9.7e-26 121.3 133 42.9
SHI37667 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-25 120.9 103 52.4
Manes.08G072166 Manihot esculenta HOM05D007305 ORTHO05D009886 6.3e-25 118.6 127 57.5
SHI27057 Sapria himalayana HOM05D007305 ORTHO05D009886 6.3e-25 118.6 103 51.5
Gorai.003G091400 Gossypium raimondii HOM05D007305 ORTHO05D009886 8.2e-25 118.2 174 40.2
Manes.18G035550 Manihot esculenta HOM05D007305 ORTHO05D009886 2.4e-24 116.7 124 58.9
Cpa.g.sc37.32 Carica papaya HOM05D007305 ORTHO05D009886 3.1e-24 116.3 122 51.6
Manes.05G187732 Manihot esculenta HOM05D007305 ORTHO05D009886 1.2e-23 114.4 83 74.7
SHI36811 Sapria himalayana HOM05D007305 ORTHO05D009886 1.5e-23 114.0 111 47.7
SHI36830 Sapria himalayana HOM05D007305 ORTHO05D009886 1.5e-23 114.0 111 47.7
SHI25004 Sapria himalayana HOM05D007305 ORTHO05D009886 2.6e-23 113.2 193 37.8
SHI14083 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-22 110.9 178 38.2
SHI07334 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-22 109.0 147 41.5
Manes.13G105340 Manihot esculenta HOM05D007305 ORTHO05D009886 2.7e-20 103.2 85 68.2
SHI17822 Sapria himalayana HOM05D000002 ORTHO05D009886 3.6e-20 102.8 182 33.0
SHI27171 Sapria himalayana HOM05D000002 ORTHO05D000001 4.6e-20 102.4 137 41.6
SHI26584 Sapria himalayana HOM05D000002 ORTHO05D000001 7.9e-20 101.7 135 42.2
Thecc.02G280700 Theobroma cacao HOM05D007305 ORTHO05D009886 1.8e-19 100.5 60 73.3
Thecc.07G142000 Theobroma cacao HOM05D007305 ORTHO05D009886 8.8e-19 98.2 60 73.3
SHI26071 Sapria himalayana HOM05D000002 ORTHO05D009886 2.5e-18 96.7 80 51.2
Thecc.05G175600 Theobroma cacao HOM05D007305 ORTHO05D009886 2.8e-17 93.2 52 78.8
SHI17283 Sapria himalayana HOM05D000002 ORTHO05D000001 6.3e-17 92.0 111 44.1
Manes.16G035125 Manihot esculenta HOM05D007305 ORTHO05D009886 3.1e-16 89.7 73 68.5
Cpa.g.sc114.45 Carica papaya HOM05D007305 ORTHO05D009886 6.9e-16 88.6 74 59.5
Gohir.D05G352126 Gossypium hirsutum HOM05D007305 ORTHO05D009886 6.9e-16 88.6 80 52.5
Gorai.009G383800 Gossypium raimondii HOM05D007305 ORTHO05D009886 6.9e-16 88.6 80 52.5
Gohir.A04G032550 Gossypium hirsutum HOM05D007305 ORTHO05D009886 2.0e-15 87.0 80 51.2
Gorai.009G450700 Gossypium raimondii HOM05D007305 ORTHO05D009886 3.4e-15 86.3 74 55.4
Cc04_g16800 Coffea canephora HOM05D007305 ORTHO05D009886 4.5e-15 85.9 53 67.9
vmacro14864 Vaccinium macrocarpon HOM05D001069 ORTHO05D009886 7.7e-15 85.1 185 26.5
vmacro13138 Vaccinium macrocarpon HOM05D001282 ORTHO05D009886 2.2e-14 83.6 227 27.8
SHI14995 Sapria himalayana HOM05D007305 ORTHO05D009886 3.8e-14 82.8 64 56.2
Gohir.A05G322708 Gossypium hirsutum HOM05D007305 ORTHO05D009886 8.5e-14 81.6 71 52.1
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-13 80.5 107 38.3
Eucgr.H03782 Eucalyptus grandis HOM05D000002 ORTHO05D000047 2.5e-13 80.1 225 28.9
SHI35060 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-13 79.0 70 48.6
SHI21600 Sapria himalayana HOM05D000002 ORTHO05D009886 7.2e-13 78.6 154 31.8
SHI26716 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-12 77.4 143 32.2
vmacro23376 Vaccinium macrocarpon HOM05D001558 ORTHO05D003061 1.6e-12 77.4 217 27.2
CSS0036773 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-12 77.0 175 26.3
CSS0010829 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-12 76.6 162 27.8
Eucgr.G01582 Eucalyptus grandis HOM05D000002 ORTHO05D000047 3.6e-12 76.3 238 28.2
SHI12340 Sapria himalayana HOM05D000002 ORTHO05D009886 3.6e-12 76.3 58 53.4
Oeu036242.1 Olea europaea HOM05D007305 ORTHO05D009886 7.9e-12 75.1 229 24.9
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 7.9e-12 75.1 190 28.4
vmacro05505 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.4e-11 74.3 182 25.8
CANSAT78G2514 Cannabis sativa HOM05D007305 ORTHO05D009886 1.8e-11 73.9 117 44.4
ECA236G1318 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-11 73.9 137 30.7
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 1.8e-11 73.9 217 27.2
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 6.7e-11 72.0 222 27.5
vmacro12534 Vaccinium macrocarpon HOM05D000671 ORTHO05D004414 8.8e-11 71.6 183 26.2
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.1e-10 71.2 182 25.8
Eucgr.C03605 Eucalyptus grandis HOM05D007305 ORTHO05D009886 5.7e-10 68.9 189 27.5
vmacro22644 Vaccinium macrocarpon HOM05D000083 ORTHO05D001732 9.7e-10 68.2 204 26.0
CSS0019500 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.7e-09 67.4 215 23.3
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.7e-09 67.4 70 48.6
Solyc04g025283.1 Solanum lycopersicum HOM05D007305 ORTHO05D009886 2.8e-09 66.6 51 62.7
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.2e-09 65.1 215 22.8
vmacro15092 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 1.1e-08 64.7 176 33.5
CSS0000940 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0004057 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0009499 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0013318 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0020187 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0021109 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0027844 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0034457 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
CSS0045746 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 215 22.8
Rhsim13G0000300 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.4e-08 64.3 246 23.2
CSS0017533 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-08 63.9 215 22.8
CSS0036528 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-08 63.9 215 22.8
CANSAT80G2584 Cannabis sativa HOM05D000002 ORTHO05D000047 1.8e-08 63.9 133 26.3
SHI03731 Sapria himalayana HOM05D007305 ORTHO05D009886 2.4e-08 63.5 106 36.8
SHI32097 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-08 63.2 218 29.8
CSS0012133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 5.3e-08 62.4 215 22.3
CiPaw.01G100200 Carya illinoinensis HOM05D000002 ORTHO05D000047 5.3e-08 62.4 116 27.6
SHI26075 Sapria himalayana HOM05D007305 ORTHO05D009886 5.3e-08 62.4 141 31.2
Cpa.g.sc25.135 Carica papaya HOM05D000002 ORTHO05D000047 9.1e-08 61.6 130 27.7
Hma1.2p1_0668F.1_g199811 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.5e-07 60.8 194 24.2
TWI23G0973 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 1.5e-07 60.8 130 28.5
SHI41210 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-07 60.5 215 28.4
SHI42687 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-07 60.5 215 29.8
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 3.4e-07 59.7 144 33.3
vmacro23207 Vaccinium macrocarpon HOM05D001558 ORTHO05D003061 3.4e-07 59.7 176 27.3
Cpa.g.sc11.108 Carica papaya HOM05D000002 ORTHO05D000047 4.5e-07 59.3 108 30.6
ECA236G3335 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.5e-07 59.3 146 29.5
SHI28210 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-07 59.3 167 28.7
Cpa.g.sc130.28 Carica papaya HOM05D000002 ORTHO05D000047 7.7e-07 58.5 129 25.6
CiPaw.04G005900 Carya illinoinensis HOM05D000002 ORTHO05D000047 7.7e-07 58.5 101 30.7
RcHm_v2.0_Chr3g0448001 Rosa chinensis HOM05D010501 ORTHO05D000047 7.7e-07 58.5 191 26.7
SHI40520 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-07 58.5 241 27.8
SHI50423 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-07 58.5 230 29.1
Ca_11532_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000047 1.0e-06 58.2 196 21.9
SHI04979 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 58.2 215 26.5
SHI10028 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 58.2 38 63.2
SHI15625 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 58.2 213 28.6
VMungo0251G1086 Vigna mungo HOM05D000336 ORTHO05D002705 1.0e-06 58.2 126 29.4
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 1.3e-06 57.8 57 59.6
Cpa.g.sc608.3 Carica papaya HOM05D000002 ORTHO05D000047 1.7e-06 57.4 193 22.8
Hma1.2p1_0349F.1_g132140 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.7e-06 57.4 230 21.7
SHI14540 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-06 57.4 214 28.5
VMungo1215G3020 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-06 57.4 124 29.0
TWI14G0936 Tripterygium wilfordii HOM05D007305 ORTHO05D009886 2.2e-06 57.0 102 32.4
TWI74G0014 Tripterygium wilfordii HOM05D007305 ORTHO05D009886 2.2e-06 57.0 102 32.4
CSS0022055 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-06 56.6 246 23.2
Hma1.2p1_0111F.1_g053730 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.9e-06 56.6 197 22.3
Hma1.2p1_0158F.1_g069853 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.9e-06 56.6 197 22.3
Hma1.2p1_0164F.1_g073240 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.9e-06 56.6 203 25.1
Hma1.2p1_0308F.1_g120101 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.9e-06 56.6 197 22.3
Sopen11g023560 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-06 56.6 50 62.0
SHI25917 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-06 56.2 231 27.3
CSS0033236 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-06 55.8 246 22.8
MBI06_g16700_MAGBIO Magnolia biondii HOM05D031959 ORTHO05D000047 5.0e-06 55.8 132 25.8
SHI22286 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-06 55.8 235 26.8
THA.LOC104810413 Tarenaya hassleriana HOM05D010399 ORTHO05D010542 5.0e-06 55.8 208 24.0
CSS0000858 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 55.5 246 22.8
CSS0001169 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 130 26.2
CSS0003806 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0004509 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0005779 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0005870 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0006173 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0007796 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 55.5 246 22.8
CSS0008635 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0014620 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0015126 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0024888 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0029482 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 55.5 246 22.8
CSS0033964 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 24.0
CSS0038170 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 55.5 246 22.8
Cpa.g.sc153.13 Carica papaya HOM05D000002 ORTHO05D000047 6.5e-06 55.5 130 30.0
Cpa.g.sc96.44 Carica papaya HOM05D000002 ORTHO05D000047 6.5e-06 55.5 129 25.6
CSS0037461 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-06 55.1 246 22.8
Cpa.g.sc63.36 Carica papaya HOM05D000002 ORTHO05D000047 8.5e-06 55.1 131 27.5
Nn1g04145 Nelumbo nucifera HOM05D000002 ORTHO05D000047 8.5e-06 55.1 195 23.1
SHI11377 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-06 55.1 211 27.5
SHI22311 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-06 55.1 216 26.4


User provided reference genes

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