Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 2.4e-142 508.8 262 100.0
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 4.6e-117 424.9 251 87.6
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 7.9e-109 397.5 245 83.7
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 3.0e-108 395.6 256 79.3
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.5e-107 393.3 245 83.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.5e-107 392.5 245 82.9
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 4.3e-107 391.7 245 82.9
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 5.6e-107 391.3 247 80.6
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 9.6e-107 390.6 243 83.5
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 3.1e-105 385.6 252 78.2
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 5.3e-105 384.8 251 81.3
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 3.4e-104 382.1 247 81.8
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 5.8e-104 381.3 252 77.4
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.0e-103 380.6 246 79.7
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 3.8e-103 378.6 252 77.8
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 3.8e-103 378.6 251 78.9
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 1.1e-102 377.1 253 77.5
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.4e-102 376.7 257 76.3
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 4.2e-102 375.2 253 77.5
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.2e-101 373.6 253 78.7
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 4.6e-101 371.7 251 79.7
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 4.6e-101 371.7 260 74.6
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.3e-100 370.2 272 71.7
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.8e-100 369.8 272 71.7
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.8e-100 369.8 249 78.3
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.8e-100 369.8 253 75.5
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 3.0e-100 369.0 252 76.2
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 6.7e-100 367.9 250 76.4
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 8.7e-100 367.5 257 75.1
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.1e-99 367.1 253 75.9
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.1e-99 367.1 253 74.3
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.9e-99 366.3 253 74.3
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 2.5e-99 365.9 254 76.4
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 2.5e-99 365.9 254 76.0
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 7.4e-99 364.4 253 76.3
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 1.3e-98 363.6 254 74.8
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.6e-98 363.2 249 75.9
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.2e-98 362.8 249 76.7
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 4.8e-98 361.7 256 71.9
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 6.3e-98 361.3 252 75.4
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 6.3e-98 361.3 256 74.6
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 8.2e-98 360.9 273 71.8
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.1e-97 360.5 256 74.2
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.4e-97 360.1 256 71.5
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.8e-97 359.8 245 75.5
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 3.1e-97 359.0 255 75.3
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 6.9e-97 357.8 253 74.3
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 6.9e-97 357.8 258 73.6
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 6.9e-97 357.8 256 74.2
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 6.9e-97 357.8 253 74.3
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 9.0e-97 357.5 255 73.7
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 2.0e-96 356.3 250 74.8
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 4.5e-96 355.1 256 72.3
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.7e-95 353.2 251 74.1
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.9e-94 349.7 254 74.0
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 4.2e-94 348.6 249 73.5
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 4.2e-94 348.6 256 71.1
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 9.4e-94 347.4 256 71.1
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 9.4e-94 347.4 252 71.4
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 1.6e-93 346.7 252 71.4
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.6e-93 345.1 248 76.2
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.0e-92 344.0 257 72.0
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.3e-92 342.8 253 71.1
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 3.9e-92 342.0 253 70.8
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 5.1e-92 341.7 208 82.7
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 5.1e-92 341.7 252 71.8
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.1e-91 340.5 267 70.8
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 2.5e-91 339.3 274 65.0
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 2.5e-91 339.3 208 82.2
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 7.4e-91 337.8 257 71.6
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 9.7e-91 337.4 256 71.1
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 9.7e-91 337.4 253 70.8
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 1.3e-90 337.0 256 70.3
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 1.7e-90 336.7 270 70.0
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 2.8e-90 335.9 259 71.0
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 8.2e-90 334.3 244 72.1
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.2e-90 334.3 321 58.3
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.1e-89 334.0 256 71.9
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.1e-89 334.0 316 59.8
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 2.4e-89 332.8 256 71.5
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 4.1e-89 332.0 257 68.5
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.2e-88 330.5 249 72.3
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.5e-88 330.1 245 71.4
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 2.0e-88 329.7 300 60.3
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 7.7e-88 327.8 288 62.2
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.0e-87 327.4 246 71.5
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 2.2e-87 326.2 244 70.9
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 5.0e-87 325.1 244 71.3
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 6.5e-87 324.7 244 70.5
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 6.5e-87 324.7 244 70.5
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 8.5e-87 324.3 251 68.5
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 3.2e-86 322.4 234 71.8
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 4.2e-86 322.0 232 72.8
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 5.5e-86 321.6 251 69.3
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.2e-85 320.5 214 78.0
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 4.7e-85 318.5 254 68.1
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.4e-81 307.0 252 67.9
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 5.3e-81 305.1 322 56.2
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 2.0e-80 303.1 255 66.7
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 5.0e-79 298.5 261 66.7
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.1e-78 297.4 193 82.4
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.9e-78 296.6 185 82.2
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 3.0e-76 289.3 256 60.5
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 3.7e-74 282.3 199 72.9
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.6e-72 276.9 216 69.4
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 2.7e-69 266.2 257 58.0
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 4.0e-68 262.3 165 80.0
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.8e-68 261.2 226 60.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.8e-68 261.2 226 60.2
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.2e-67 260.8 263 59.7
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.5e-67 258.1 200 70.5
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.3e-66 257.3 253 59.7
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 6.3e-66 255.0 274 53.6
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.6e-64 250.4 157 79.6
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 5.0e-63 245.4 202 68.3
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 9.4e-62 241.1 155 80.0
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.7e-61 239.6 249 57.4
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 2.7e-61 239.6 210 64.8
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.2e-56 224.2 247 52.6
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.8e-53 213.0 251 50.2
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 2.6e-51 206.5 182 64.3
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.4e-49 199.9 126 82.5
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 1.1e-41 174.5 159 61.0
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 7.8e-32 141.7 113 64.6
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.6e-29 132.9 98 70.4
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.3e-26 124.4 188 38.8
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 5.4e-17 92.4 289 31.1
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 9.3e-17 91.7 206 30.6
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 1.9e-14 84.0 77 58.4
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.2e-11 74.7 71 57.7
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.5e-11 74.3 178 35.4
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 7.6e-11 72.0 52 73.1
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.9e-07 59.7 45 73.3
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 6.6e-07 58.9 74 52.7


User provided reference genes

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