Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 5.6e-77 290.8 142 100.0
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 4.5e-58 228.0 145 81.4
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.9e-48 196.1 145 71.7
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 3.2e-48 195.3 147 69.4
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 3.3e-45 185.3 146 65.8
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 3.8e-33 145.2 117 65.0
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 6.5e-33 144.4 108 67.6
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 2.5e-32 142.5 111 64.9
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 3.2e-32 142.1 117 63.2
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 7.2e-32 141.0 98 69.4
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.2e-31 140.2 75 81.3
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.7e-31 139.0 120 62.5
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 4.7e-31 138.3 92 72.8
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.1e-31 137.9 93 71.0
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 6.1e-31 137.9 108 63.0
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.4e-30 136.7 96 70.8
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 3.0e-30 135.6 77 80.5
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.0e-30 135.6 93 69.9
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-30 135.2 73 79.5
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 5.2e-30 134.8 93 69.9
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 5.2e-30 134.8 72 84.7
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 6.7e-30 134.4 72 80.6
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 6.7e-30 134.4 74 79.7
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 6.7e-30 134.4 74 79.7
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 6.7e-30 134.4 74 79.7
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 1.2e-29 133.7 73 76.7
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.5e-29 133.3 74 78.4
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.5e-29 133.3 74 78.4
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 1.5e-29 133.3 74 78.4
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 2.0e-29 132.9 75 74.7
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 2.0e-29 132.9 91 70.3
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 3.3e-29 132.1 77 80.5
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 7.5e-29 131.0 81 75.3
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.7e-28 129.8 74 77.0
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.7e-28 129.8 75 73.3
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 2.2e-28 129.4 73 75.3
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.8e-28 129.0 80 72.5
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 3.7e-28 128.6 80 71.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.7e-28 128.6 86 65.1
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.7e-28 128.6 86 65.1
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.7e-28 128.6 86 65.1
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 3.7e-28 128.6 121 55.4
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 6.3e-28 127.9 75 73.3
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.1e-27 125.6 86 64.0
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.3e-27 124.8 82 73.2
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 7.0e-27 124.4 79 74.7
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 9.1e-27 124.0 73 74.0
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.2e-26 123.6 73 74.0
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.2e-26 123.6 73 74.0
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 1.2e-26 123.6 73 74.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.6e-26 123.2 77 76.6
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 2.7e-26 122.5 73 72.6
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 4.5e-26 121.7 95 64.2
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.3e-25 120.2 73 71.2
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.2e-25 119.4 73 71.2
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.2e-25 119.4 87 63.2
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.1e-24 117.1 80 65.0
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.1e-24 117.1 72 72.2
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 9.4e-24 114.0 73 72.6
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 1.0e-22 110.5 73 72.6
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 2.3e-22 109.4 98 58.2
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 3.0e-22 109.0 102 55.9
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 3.0e-22 109.0 57 82.5
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 4.0e-22 108.6 76 68.4
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 5.2e-22 108.2 73 71.2
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 5.2e-22 108.2 73 71.2
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 5.2e-22 108.2 73 71.2
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 6.8e-22 107.8 71 69.0
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 69.9
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.2e-21 107.1 102 53.9
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 9.8e-21 104.0 58 82.8
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 4.8e-20 101.7 55 80.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 4.8e-20 101.7 55 80.0
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 4.8e-20 101.7 55 80.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 4.8e-20 101.7 55 80.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 4.8e-20 101.7 55 80.0
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 1.6e-18 96.7 55 76.4
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.0e-18 96.3 63 68.3
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.5e-18 95.1 65 70.8
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 4.5e-18 95.1 67 64.2
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-18 95.1 67 64.2
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.3e-17 93.6 60 75.0
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.3e-17 93.6 60 75.0
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 1.3e-17 93.6 60 75.0
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-17 93.6 67 62.7
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.3e-17 92.8 65 66.2
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 5.0e-17 91.7 71 63.4
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 8.6e-17 90.9 117 44.4
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 3.6e-15 85.5 55 63.6
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.7e-15 85.1 80 57.5
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 8.0e-15 84.3 62 61.3
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.4e-14 83.6 61 62.3
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 5.2e-14 81.6 77 49.4
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 4.9e-12 75.1 58 53.4
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-12 74.7 53 64.2
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.4e-11 72.8 77 51.9
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 2.4e-11 72.8 58 56.9
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 2.4e-11 72.8 58 56.9
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 1.6e-10 70.1 76 42.1
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.7e-09 66.6 60 48.3
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.6e-09 64.7 35 80.0
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.6e-09 64.7 35 80.0
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 6.6e-09 64.7 35 80.0
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.1e-08 63.9 78 42.3
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 2.5e-08 62.8 41 65.9
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.3e-08 62.4 77 45.5
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 3.3e-08 62.4 36 72.2
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.3e-08 62.0 45 64.4
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 9.5e-08 60.8 78 41.0
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.8e-07 59.3 77 41.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 3.6e-07 58.9 37 67.6
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.0e-06 57.4 39 66.7
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.0e-06 55.8 60 50.0
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 4.0e-06 55.5 43 60.5


User provided reference genes

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