Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.8e-110 402.5 197 100.0
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 1.6e-53 213.4 240 53.8
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.8e-49 199.9 144 70.8
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.5e-48 196.8 144 71.5
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 3.4e-48 195.7 144 71.5
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 7.6e-48 194.5 144 69.4
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.3e-47 193.7 142 71.1
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 2.9e-47 192.6 142 69.7
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 4.9e-47 191.8 142 69.0
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 8.4e-47 191.0 144 68.8
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 8.4e-47 191.0 144 68.8
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 1.9e-46 189.9 144 68.8
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.9e-46 189.9 144 69.4
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.5e-46 189.5 141 70.9
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 4.2e-46 188.7 144 66.7
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 7.1e-46 188.0 144 67.4
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.2e-45 187.2 141 67.4
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 1.2e-45 187.2 144 67.4
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 1.2e-45 187.2 143 66.4
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.2e-45 187.2 144 68.8
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.6e-45 186.8 144 66.7
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.1e-45 186.4 144 67.4
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.1e-45 186.4 148 62.2
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 4.6e-45 185.3 141 67.4
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 4.6e-45 185.3 145 65.5
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 7.9e-45 184.5 141 67.4
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 7.9e-45 184.5 141 66.0
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 7.9e-45 184.5 144 66.0
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.0e-44 184.1 144 67.4
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 1.0e-44 184.1 148 62.2
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.3e-44 183.7 143 65.0
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.3e-44 183.7 143 66.4
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 2.3e-44 183.0 147 61.9
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 3.0e-44 182.6 144 68.1
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 3.0e-44 182.6 145 64.8
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 6.7e-44 181.4 141 65.2
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 6.7e-44 181.4 143 67.8
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.1e-43 180.6 144 63.2
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.5e-43 180.3 143 64.3
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.5e-43 180.3 143 64.3
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.5e-43 180.3 143 64.3
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-43 179.9 143 64.3
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.9e-43 179.9 140 66.4
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 3.3e-43 179.1 175 57.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.3e-43 179.1 139 66.2
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 5.7e-43 178.3 138 68.1
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 7.4e-43 177.9 143 63.6
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.3e-42 177.2 143 63.6
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 2.1e-42 176.4 143 62.9
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 2.8e-42 176.0 143 62.9
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.8e-42 176.0 148 58.8
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 2.8e-42 176.0 148 58.8
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 2.8e-42 176.0 148 58.8
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 6.2e-42 174.9 148 59.5
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 8.2e-42 174.5 143 63.6
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 8.2e-42 174.5 144 64.6
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 8.2e-42 174.5 142 63.4
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.1e-41 174.1 144 61.8
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 1.8e-41 173.3 187 54.0
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.8e-41 173.3 139 63.3
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.9e-41 171.4 139 64.7
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 9.0e-41 171.0 143 61.5
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 9.0e-41 171.0 142 62.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 9.0e-41 171.0 144 63.2
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 9.0e-41 171.0 142 64.8
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 2.0e-40 169.9 142 60.6
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 2.6e-40 169.5 145 63.4
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 2.6e-40 169.5 144 61.1
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 3.4e-40 169.1 140 61.4
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 4.5e-40 168.7 143 62.9
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 4.5e-40 168.7 141 63.1
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 4.5e-40 168.7 150 59.3
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 4.5e-40 168.7 139 61.9
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.0e-39 167.5 138 62.3
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.0e-39 167.5 143 61.5
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.0e-39 167.5 142 61.3
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.0e-39 167.5 143 59.4
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 1.3e-39 167.2 141 63.1
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.2e-39 166.4 144 60.4
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 2.2e-39 166.4 144 60.4
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 2.2e-39 166.4 144 60.4
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 2.2e-39 166.4 144 60.4
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 2.2e-39 166.4 144 60.4
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 2.2e-39 166.4 144 60.4
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 5.0e-39 165.2 144 59.7
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 5.0e-39 165.2 142 59.9
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 8.4e-39 164.5 139 61.9
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 8.4e-39 164.5 139 62.6
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 8.4e-39 164.5 131 67.9
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.4e-38 163.7 144 59.0
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.4e-38 163.7 144 59.0
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 2.5e-38 162.9 146 58.2
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 3.2e-38 162.5 144 59.7
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 6.1e-37 158.3 166 52.4
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 6.1e-37 158.3 180 52.2
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 7.9e-37 157.9 141 59.6
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 7.9e-37 157.9 191 48.7
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.0e-36 157.5 139 59.0
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 3.0e-36 156.0 139 60.4
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 3.9e-36 155.6 139 59.7
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 8.7e-36 154.5 140 55.0
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.5e-35 153.7 143 55.9
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.3e-34 150.6 125 64.0
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 7.7e-32 141.4 193 44.6
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.7e-31 140.2 137 51.1
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 1.9e-30 136.7 139 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.6e-29 133.7 139 49.6
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.8e-28 130.2 127 48.0
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 4.3e-27 125.6 89 71.9
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 9.7e-27 124.4 136 47.1
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 8.2e-26 121.3 89 69.7
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.4e-25 119.8 89 66.3
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.6e-24 116.3 89 66.3
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.9e-24 115.2 138 48.6
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.9e-24 115.2 138 48.6
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 7.7e-24 114.8 147 48.3
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 1.7e-15 87.0 174 31.6
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 6.5e-15 85.1 117 36.8
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.5e-14 84.0 71 62.0
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 4.7e-13 79.0 107 35.5
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-11 74.3 55 67.3
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 3.7e-10 69.3 115 33.0
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.1e-09 67.8 38 76.3
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 1.4e-09 67.4 47 66.0
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 2.9e-07 59.7 65 52.3
Gohir.A01G039350 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.2e-06 56.2 45 57.8


User provided reference genes

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