Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 0.0e+00 1172.1 602 100.0
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.7e-292 1008.8 603 85.6
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.5e-291 1005.7 603 84.7
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.6e-290 1001.1 603 84.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 6.1e-290 1000.3 603 84.7
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.4e-286 989.2 602 83.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.0e-285 985.3 651 79.4
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.5e-283 979.2 601 82.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 3.2e-283 978.0 615 81.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 7.2e-283 976.9 602 82.4
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.7e-282 974.9 607 81.7
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 8.8e-281 969.9 594 82.7
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 7.5e-280 966.8 595 82.4
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.7e-279 965.7 591 82.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 6.3e-279 963.8 684 74.9
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.1e-278 963.0 626 79.1
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 9.5e-275 949.9 603 80.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 8.9e-273 943.3 603 79.8
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.5e-272 942.6 604 79.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.6e-272 941.8 601 80.0
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 7.5e-272 940.3 602 79.6
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-271 939.5 601 78.7
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.3e-271 939.5 602 79.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 6.3e-271 937.2 623 78.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.1e-270 936.4 568 82.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 5.4e-270 934.1 603 78.1
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.5e-269 931.4 603 78.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 7.8e-269 930.2 603 78.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.3e-268 928.7 593 79.1
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 2.3e-268 928.7 601 79.2
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.3e-268 928.7 593 80.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.5e-267 926.0 593 78.9
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.5e-267 925.2 603 77.4
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.5e-267 925.2 601 78.2
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.2e-266 922.9 603 77.1
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 6.1e-266 920.6 592 78.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.0e-265 919.8 593 78.4
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.4e-265 919.5 599 77.6
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 6.8e-265 917.1 604 77.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 7.5e-264 913.7 593 78.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 4.9e-263 911.0 604 76.2
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 6.4e-263 910.6 596 77.9
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 6.4e-263 910.6 604 76.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 8.3e-263 910.2 603 77.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.9e-262 909.1 604 76.2
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.4e-262 908.7 604 76.5
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.2e-262 908.3 604 77.8
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 9.2e-262 906.7 601 76.5
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.2e-261 906.4 604 76.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 2.7e-261 905.2 599 77.3
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 6.0e-261 904.0 604 76.0
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 6.0e-261 904.0 604 75.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 7.8e-261 903.7 601 76.7
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.7e-260 902.5 603 76.1
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.0e-260 901.0 604 75.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 5.0e-260 901.0 602 76.2
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 6.6e-260 900.6 594 76.9
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.6e-260 900.2 602 76.7
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.1e-259 899.8 600 76.3
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.5e-259 899.4 599 76.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.9e-259 899.0 608 76.5
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.9e-259 899.0 602 76.2
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.5e-259 898.7 604 75.3
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 5.6e-259 897.5 606 76.4
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-258 896.3 599 75.6
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.2e-258 896.3 602 76.1
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.6e-258 896.0 602 76.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.1e-258 895.6 603 74.6
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.1e-258 895.6 595 76.3
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.8e-258 895.2 599 75.5
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.2e-258 894.0 619 75.1
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.1e-258 893.6 601 76.2
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-257 892.9 599 75.5
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-257 892.9 599 75.5
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.4e-257 892.9 599 75.5
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.3e-257 892.1 599 76.0
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.3e-257 892.1 599 75.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.3e-257 892.1 660 70.9
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.6e-256 888.6 604 75.0
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 4.4e-256 887.9 595 75.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.8e-256 887.5 604 76.0
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.2e-255 885.6 599 75.6
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 4.9e-255 884.4 597 75.7
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.4e-255 884.0 622 72.3
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 3.0e-252 875.2 589 75.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 5.1e-252 874.4 596 74.0
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 5.1e-252 874.4 608 74.3
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.1e-251 873.2 599 74.8
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.2e-250 869.8 600 74.2
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.8e-249 865.9 597 74.2
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.8e-249 865.9 570 77.4
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.0e-249 864.8 603 72.8
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-248 862.4 627 72.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.8e-248 860.9 480 92.5
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.1e-246 856.7 602 70.8
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.2e-246 855.1 580 75.5
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 5.4e-246 854.4 564 77.0
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.1e-246 854.0 602 74.8
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 8.6e-244 847.0 546 78.0
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.1e-241 840.1 601 71.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.8e-241 839.3 601 70.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.0e-241 838.2 570 76.5
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 5.4e-238 827.8 595 73.1
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 5.4e-238 827.8 597 71.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.6e-235 817.8 586 72.4
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.2e-234 814.3 586 72.2
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 4.9e-231 804.7 611 68.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 6.0e-229 797.7 641 66.6
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 7.6e-224 780.8 657 61.9
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 6.0e-221 771.2 601 66.9
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.1e-217 760.4 504 76.2
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 5.3e-217 758.1 599 64.4
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 6.5e-215 751.1 494 76.9
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.7e-213 745.7 478 79.3
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.7e-212 741.1 602 64.3
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 8.4e-207 724.2 574 63.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.2e-194 682.9 545 66.8
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.9e-188 662.1 428 78.3
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.8e-183 645.6 504 67.3
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.0e-180 635.6 442 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-172 610.9 610 53.0
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.1e-169 600.9 599 52.9
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.1e-169 599.0 569 54.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 6.8e-148 528.5 436 61.2
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 8.9e-148 528.1 337 79.8
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-145 520.8 367 73.6
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 5.6e-142 508.8 605 46.3
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.3e-130 471.1 418 59.6
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.9e-129 467.2 575 44.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-125 454.1 289 80.3
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.8e-125 453.4 332 71.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.7e-125 452.6 533 51.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.6e-112 411.0 249 80.7
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 8.4e-106 388.7 281 71.5
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.1e-100 370.2 441 49.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.6e-88 329.7 273 64.1
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.1e-80 302.8 246 66.3
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 9.7e-78 295.4 689 32.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.5e-70 271.6 182 76.9
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 7.4e-70 269.2 528 34.3
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.3e-63 247.7 154 81.2
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 4.1e-60 236.9 156 76.9
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-59 235.3 155 78.1
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.3e-45 186.0 106 84.9
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.1e-44 183.7 108 82.4
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 4.5e-43 180.3 612 27.5
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.6e-34 149.8 96 76.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.0e-31 140.6 120 55.8
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-30 138.3 98 69.4
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.1e-28 130.6 185 42.2
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 1.2e-27 129.0 74 82.4
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.0e-26 124.4 99 58.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.2e-23 113.6 66 81.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.9e-20 105.1 67 67.2
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.2e-20 104.4 633 22.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.6e-16 92.0 78 55.1
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.8e-16 91.3 94 54.3
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.1e-15 87.8 49 83.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.0e-14 85.1 48 83.3
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 7.1e-12 76.6 200 31.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.2e-11 75.9 71 49.3
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.7e-11 74.7 62 67.7
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 5.1e-10 70.5 54 72.2
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.5e-09 68.9 54 70.4
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.8e-07 62.0 54 55.6


User provided reference genes

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