Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.0e-161 572.4 292 100.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.1e-140 503.4 292 87.0
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.5e-140 503.1 292 87.0
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.5e-140 502.3 292 87.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 4.3e-140 501.5 292 86.6
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 5.6e-140 501.1 292 85.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 7.4e-140 500.7 292 86.0
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 86.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.8e-139 498.0 293 87.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.4e-138 496.5 292 86.0
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.4e-138 496.5 292 84.6
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.8e-138 496.1 292 86.0
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.6e-137 492.3 290 86.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.4e-137 491.9 292 84.6
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 5.8e-137 491.1 292 83.9
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.3e-136 490.0 306 81.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.7e-136 489.6 290 86.2
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.7e-136 489.6 292 84.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 8.4e-136 487.3 292 84.9
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 8.4e-136 487.3 292 84.2
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 8.4e-136 487.3 292 84.2
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 82.9
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.5e-135 485.7 292 83.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.2e-134 483.4 292 81.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 81.5
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 4.6e-134 481.5 290 82.4
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 6.0e-134 481.1 291 83.8
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 6.0e-134 481.1 294 82.0
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 7.9e-134 480.7 294 84.0
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.0e-133 480.3 292 82.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.0e-133 480.3 280 86.4
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.3e-133 479.9 290 82.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 5.1e-133 478.0 290 81.7
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.1e-132 476.9 292 82.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.5e-132 475.7 292 82.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 7.4e-132 474.2 291 83.5
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-131 473.4 294 82.7
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.1e-131 472.6 323 76.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.1e-130 470.3 292 80.8
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 3.1e-130 468.8 291 81.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 5.3e-130 468.0 292 81.8
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 79.5
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.6e-129 465.7 292 79.1
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.0e-128 463.8 292 80.1
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.3e-128 463.4 290 80.0
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.9e-128 462.2 291 81.1
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 6.5e-128 461.1 291 81.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 8.4e-128 460.7 293 80.9
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-127 460.3 321 75.7
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.4e-127 459.9 292 78.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.2e-127 458.8 273 85.7
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 4.2e-127 458.4 292 78.8
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 4.2e-127 458.4 292 80.1
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 4.2e-127 458.4 293 80.5
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 4.2e-127 458.4 326 72.7
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 9.3e-127 457.2 292 77.7
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.6e-126 456.4 292 78.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.7e-126 455.7 293 80.2
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 3.6e-126 455.3 292 77.7
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.0e-125 453.8 328 73.2
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.3e-125 453.4 290 77.6
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 3.0e-125 452.2 292 77.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.9e-125 451.8 292 78.8
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.9e-125 451.8 293 78.8
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 5.1e-125 451.4 292 78.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 8.7e-125 450.7 292 77.7
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 8.7e-125 450.7 292 77.4
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.3e-124 448.4 297 76.4
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.4e-122 442.6 294 75.9
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.1e-122 441.8 292 74.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 6.9e-122 441.0 293 77.5
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 6.9e-122 441.0 292 75.7
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 9.0e-122 440.7 268 81.3
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 5.9e-121 438.0 297 76.8
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.5e-120 434.5 292 76.7
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 4.2e-119 431.8 291 76.3
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 3.6e-118 428.7 293 74.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 7.9e-118 427.6 294 75.2
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 7.9e-118 427.6 294 75.2
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-117 427.2 293 75.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.8e-117 426.4 290 73.4
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.9e-117 425.2 292 72.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 5.1e-117 424.9 292 71.6
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.7e-117 424.5 290 73.1
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.3e-116 422.2 290 73.1
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.8e-115 419.1 385 62.6
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 4.8e-115 418.3 237 87.3
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 4.8e-115 418.3 294 73.8
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.1e-114 417.2 294 70.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 9.1e-114 414.1 285 74.0
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 9.1e-114 414.1 308 69.2
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.4e-113 412.1 292 73.6
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.4e-113 412.1 310 68.4
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.0e-112 410.6 290 73.4
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-112 410.2 292 73.3
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.9e-111 406.4 290 72.8
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-111 405.2 292 71.9
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-111 405.2 292 71.9
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 7.2e-111 404.4 293 72.4
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.2e-110 403.7 292 72.6
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.6e-110 403.3 292 71.6
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.6e-110 403.3 293 71.3
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.6e-110 403.3 292 70.9
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.6e-110 403.3 292 69.5
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.1e-110 402.9 290 72.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.8e-109 399.8 293 70.0
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 6.7e-109 397.9 291 72.2
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 3.7e-107 392.1 293 67.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 6.3e-107 391.3 292 69.2
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 8.2e-107 391.0 299 66.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.4e-106 389.4 293 67.6
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.4e-106 389.4 231 83.5
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.0e-101 372.1 297 65.3
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 4.4e-100 368.6 292 65.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.2e-99 366.3 291 67.0
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.8e-98 363.2 227 77.1
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.9e-97 358.2 298 64.8
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.9e-95 353.2 292 68.5
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.5e-95 352.8 292 65.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-93 347.1 239 73.6
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.4e-93 347.1 293 62.1
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.8e-93 346.7 261 70.1
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 6.8e-93 344.7 239 74.9
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.4e-92 342.4 208 83.7
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 7.5e-92 341.3 191 87.4
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.0e-85 320.9 289 59.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.6e-84 316.2 285 56.8
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.3e-79 298.9 184 77.7
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 7.5e-76 288.1 296 52.0
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.3e-75 287.3 297 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.6e-73 278.9 191 70.2
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 8.6e-72 274.6 202 69.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 8.9e-69 264.6 294 51.4
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.6e-63 245.4 290 51.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.2e-54 217.6 295 47.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.2e-54 217.6 295 47.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.2e-54 217.6 295 47.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.6e-52 208.4 266 48.5
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.9e-47 193.7 105 90.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.4e-44 182.6 107 83.2
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.3e-40 170.2 228 46.5
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 6.6e-40 168.7 154 60.4
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-39 167.5 151 60.3
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.9e-39 167.2 154 59.7
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.9e-39 167.2 154 59.7
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-33 147.5 89 82.0
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.0e-32 144.8 194 40.2
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 7.4e-31 138.7 107 66.4
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.8e-30 136.7 109 68.8
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.9e-27 126.7 73 80.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.9e-27 126.7 73 80.8
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.1e-26 124.8 72 80.6
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 5.6e-23 112.5 93 66.7
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 4.8e-22 109.4 68 75.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 6.9e-21 105.5 128 47.7
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.2e-20 104.8 111 49.5
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 7.1e-18 95.5 188 38.3
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.5e-15 87.8 59 69.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 8.2e-14 82.0 231 29.9
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.2e-12 78.2 58 70.7
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 3.8e-11 73.2 86 50.0
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 8.7e-08 62.0 44 63.6
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 1.9e-07 60.8 44 61.4


User provided reference genes

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