Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 0.0e+00 1171.4 610 100.0
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.7e-300 1035.4 610 87.9
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.9e-299 1031.9 623 84.4
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 1.9e-299 1031.9 610 84.6
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.5e-299 1031.6 610 87.5
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 9.5e-299 1029.6 610 83.8
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.2e-298 1029.2 610 83.8
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.3e-297 1025.0 610 84.1
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 2.6e-296 1021.5 610 85.6
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 9.9e-296 1019.6 661 81.8
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.4e-294 1015.8 607 80.4
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 7.8e-293 1010.0 616 86.2
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 1.7e-292 1008.8 610 83.8
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 7.3e-291 1003.4 609 84.6
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 5.2e-289 997.3 610 81.5
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 3.4e-288 994.6 610 83.3
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 1.3e-287 992.6 609 83.9
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 2.9e-287 991.5 609 80.0
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 2.4e-286 988.4 609 79.3
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 3.2e-286 988.0 637 78.8
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 7.1e-286 986.9 610 83.8
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.6e-285 985.7 610 80.5
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 2.7e-285 984.9 612 83.2
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 2.7e-285 984.9 609 79.5
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.3e-284 982.6 622 82.0
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.7e-284 982.2 609 82.9
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 2.3e-284 981.9 611 81.5
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 5.1e-284 980.7 601 79.7
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 5.1e-284 980.7 595 79.2
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 6.6e-284 980.3 607 81.2
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 1.9e-283 978.8 609 79.0
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 5.6e-283 977.2 605 80.7
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.2e-282 976.1 607 79.7
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 2.1e-282 975.3 610 82.0
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 3.6e-282 974.5 605 80.7
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 8.1e-282 973.4 605 81.0
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 9.0e-281 969.9 611 80.9
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 1.2e-280 969.5 610 79.5
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 3.8e-279 964.5 609 75.7
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 3.8e-279 964.5 612 80.6
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 1.9e-278 962.2 609 80.8
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.9e-278 962.2 605 81.7
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.1e-278 960.3 610 80.8
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 9.3e-278 959.9 609 81.1
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.2e-277 959.5 610 78.7
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 1.6e-277 959.1 604 78.5
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.6e-277 959.1 607 78.7
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 2.1e-277 958.7 610 81.0
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 2.7e-277 958.4 622 78.1
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 3.5e-277 958.0 621 79.5
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 4.6e-277 957.6 610 81.0
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.3e-276 956.1 633 76.6
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 1.7e-276 955.7 610 78.0
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.7e-276 955.7 610 78.5
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.3e-276 955.3 621 79.2
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 1.9e-275 952.2 605 82.3
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 1.9e-275 952.2 609 80.8
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 2.5e-275 951.8 610 77.9
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.8e-274 948.3 619 79.0
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 8.1e-274 946.8 608 78.8
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 2.4e-273 945.3 607 78.1
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.1e-273 944.9 608 78.5
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 4.0e-273 944.5 611 77.4
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 4.0e-273 944.5 608 78.5
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 5.3e-273 944.1 604 79.0
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 5.3e-273 944.1 604 79.0
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.5e-272 942.6 607 77.6
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.0e-272 942.2 609 75.9
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 2.2e-271 938.7 610 77.9
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 2.9e-271 938.3 610 78.5
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 4.9e-271 937.6 605 77.9
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 6.4e-271 937.2 608 77.6
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 6.0e-269 930.6 608 77.3
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 6.0e-269 930.6 610 76.1
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 1.3e-268 929.5 608 76.8
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.3e-268 928.7 608 77.3
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 6.7e-268 927.2 608 77.0
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.1e-267 926.4 610 76.2
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 3.3e-267 924.9 608 76.8
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 3.3e-267 924.9 608 76.8
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 3.1e-265 918.3 611 77.4
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.2e-264 916.4 610 74.8
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 1.4e-262 909.4 612 74.2
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 7.1e-262 907.1 610 72.3
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 2.1e-261 905.6 608 76.6
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 6.0e-261 904.0 611 73.2
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 1.9e-259 899.0 610 71.6
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 7.4e-259 897.1 607 73.0
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 3.7e-258 894.8 610 73.4
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 2.4e-257 892.1 608 73.4
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 5.3e-257 891.0 607 70.2
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 4.9e-255 884.4 606 69.0
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.4e-255 883.6 610 68.2
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 1.4e-254 882.9 688 65.4
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 1.9e-254 882.5 611 72.2
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 5.5e-254 880.9 610 72.6
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 7.1e-254 880.6 589 74.2
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 3.5e-253 878.2 610 70.2
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 2.3e-252 875.5 610 68.4
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.5e-251 872.8 690 68.3
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 9.7e-251 870.2 607 70.0
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 4.8e-250 867.8 608 70.9
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 8.2e-250 867.1 606 70.0
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.1e-249 866.7 623 68.5
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 1.2e-248 863.2 562 78.6
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 4.5e-248 861.3 604 70.7
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 7.7e-248 860.5 610 69.7
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 1.1e-246 856.7 607 70.0
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 9.4e-246 853.6 611 67.9
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 8.8e-244 847.0 607 69.2
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.7e-242 841.6 607 70.7
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 3.7e-242 841.6 682 61.9
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 1.1e-241 840.1 592 70.1
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.4e-241 839.7 613 71.5
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 2.4e-241 839.0 611 67.4
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 4.1e-241 838.2 607 67.1
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.6e-240 835.5 613 70.0
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 4.5e-240 834.7 613 68.8
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.8e-239 831.6 613 69.0
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 8.5e-239 830.5 613 67.9
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 4.7e-237 824.7 613 68.2
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 3.0e-236 822.0 645 65.3
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 3.0e-236 822.0 613 68.7
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 3.9e-236 821.6 618 67.5
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 3.9e-236 821.6 618 67.5
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.5e-235 819.7 607 68.0
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.5e-235 819.7 611 68.1
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 7.4e-235 817.4 618 67.2
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 1.7e-234 816.2 618 67.0
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 3.7e-234 815.1 613 67.5
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.6e-221 773.1 524 72.5
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.7e-221 772.3 524 72.3
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 8.9e-204 714.1 472 79.4
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 2.8e-202 709.1 606 58.7
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.5e-195 686.8 478 71.1
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 6.4e-194 681.4 615 53.7
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.0e-191 672.5 400 85.2
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 3.3e-174 615.9 385 82.3
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 9.3e-169 597.8 611 53.2
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 1.6e-168 597.0 609 49.9
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 6.6e-167 591.7 429 70.2
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 1.2e-155 554.3 423 67.6
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 1.0e-143 514.6 480 57.5
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 1.7e-130 470.7 283 82.0
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 2.3e-127 460.3 331 68.6
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 1.1e-124 451.4 355 63.9
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 1.0e-122 444.9 518 51.2
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 3.0e-119 433.3 352 61.4
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 2.3e-95 354.0 647 35.1
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 9.2e-92 342.0 222 77.0
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 9.2e-92 342.0 621 39.1
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.1e-89 335.1 185 83.2
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 1.2e-78 298.5 495 36.6
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 1.4e-63 248.4 166 78.9
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 1.8e-63 248.1 166 78.9
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 8.9e-63 245.7 171 80.1
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 1.7e-61 241.5 164 78.7
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 1.1e-60 238.8 164 78.0
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 8.1e-56 222.6 129 79.1
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 1.1e-55 222.2 128 80.5
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.1e-55 220.7 131 79.4
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 3.2e-52 210.7 131 76.3
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 7.9e-43 179.5 131 69.5
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 8.7e-42 176.0 161 55.3
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 1.3e-34 152.1 98 74.5
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 8.4e-29 132.9 132 55.3
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 2.3e-26 124.8 81 72.8
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 1.6e-24 118.6 95 58.9
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 1.4e-23 115.5 166 41.0
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 2.7e-19 101.3 224 33.0
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 4.3e-17 94.0 54 75.9
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 3.1e-15 87.8 72 59.7
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 9.0e-15 86.3 72 58.3
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 5.0e-13 80.5 53 73.6
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 1.8e-10 72.0 52 65.4
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 6.7e-10 70.1 49 59.2
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 8.8e-10 69.7 49 63.3
Phvul.008G125400 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 4.8e-08 63.9 301 21.3
MD03G1215900 Malus domestica HOM05D002303 ORTHO05D007639 2.4e-07 61.6 198 22.2
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 9.1e-07 59.7 192 20.3
Gorai.007G154000 Gossypium raimondii HOM05D000836 ORTHO05D000709 9.1e-07 59.7 319 20.4
Prupe.4G196900 Prunus persica HOM05D002303 ORTHO05D007639 1.2e-06 59.3 198 22.7
Prupe.8G203500 Prunus persica HOM05D000836 ORTHO05D000709 1.2e-06 59.3 301 19.6
Gohir.D11G143800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.0e-06 58.5 194 25.8


User provided reference genes

Program Settings